RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 GPR35Q9HC97 309 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 UPB1Q9UBR1 384 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 LAMP5Q9UJQ1 280 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 LSM2Q9Y333 95 aaKnown RBP13.48□□□□□ -0.25
SS18-215ENST00000580642 FAM215AQ9Y5M1 114 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 PKD1L2Q7Z442 2459 aa13.48□□□□□ -0.25
SS18-215ENST00000580642 A0A1W2PQL4 384 aaPredicted RBP13.47□□□□□ -0.25
SS18-215ENST00000580642 FAM171A2A8MVW0 826 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 SELENOFO60613 162 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 ZNF254O75437 659 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 MT-ND5P03915 603 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 CD8BP10966 210 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 MPGP29372 298 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 KIR2DL2P43627 348 aaPredicted RBP13.47□□□□□ -0.25
SS18-215ENST00000580642 ETV1P50549 477 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 PER3P56645 1201 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 TAS2R43P59537 309 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 ROR2Q01974 943 aaKnown RBP13.47□□□□□ -0.25
SS18-215ENST00000580642 ROM1Q03395 351 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 LY6DQ14210 128 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 CDONQ4KMG0 1287 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 PHYHD1Q5SRE7 291 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 ZNF322Q6U7Q0 402 aaPredicted RBP13.47□□□□□ -0.25
SS18-215ENST00000580642 NUFIP2Q7Z417 695 aaKnown RBP13.47□□□□□ -0.25
SS18-215ENST00000580642 ZNF485Q8NCK3 441 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 C11orf40Q8WZ69 217 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 TTYH2Q9BSA4 534 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 ALG8Q9BVK2 526 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 SLC7A10Q9NS82 523 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 TMEM38BQ9NVV0 291 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 CYB5R1Q9UHQ9 305 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 CLEC4AQ9UMR7 237 aa13.47□□□□□ -0.25
SS18-215ENST00000580642 TPRP12270 2363 aaKnown RBP13.47□□□□□ -0.25
SS18-215ENST00000580642 A0A1W2PPL8 197 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 TVP23AA6NH52 213 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 E9PLN8 166 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 SEC14L2O76054 403 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 APOL3O95236 402 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 FARS2O95363 451 aaKnown RBP13.46□□□□□ -0.25
SS18-215ENST00000580642 PTHP01270 115 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 MRPL3P09001 348 aaKnown RBP13.46□□□□□ -0.25
SS18-215ENST00000580642 CST2P09228 141 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 TMIGD3P0DMS9 266 aaPredicted RBP13.46□□□□□ -0.25
SS18-215ENST00000580642 HOXB1P14653 301 aaPredicted RBP13.46□□□□□ -0.25
SS18-215ENST00000580642 CTSSP25774 331 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 NAA10P41227 235 aaPredicted RBP13.46□□□□□ -0.25
SS18-215ENST00000580642 PCBD1P61457 104 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 TGFBR3Q03167 851 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 ZNF85Q03923 595 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 MLLT11Q13015 90 aaPredicted RBP13.46□□□□□ -0.25
SS18-215ENST00000580642 GPR50Q13585 617 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 PRR30Q53SZ7 412 aaPredicted RBP13.46□□□□□ -0.25
SS18-215ENST00000580642 TFAP2EQ6VUC0 442 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 Q6ZT83 130 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 SEM1Q6ZVN7 128 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 DPY19L4Q7Z388 723 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 CCDC36Q8IYA8 594 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 SNX33Q8WV41 574 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 NABP1Q96AH0 204 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 FOXB1Q99853 325 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 VKORC1Q9BQB6 163 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 PIGMQ9H3S5 423 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 C1orf198Q9H425 327 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 SEC61A2Q9H9S3 476 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 BABAM2Q9NXR7 383 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 ZNF629Q9UEG4 869 aaPredicted RBP13.46□□□□□ -0.25
SS18-215ENST00000580642 CLEC2DQ9UHP7 191 aa13.46□□□□□ -0.25
SS18-215ENST00000580642 MAP1BP46821 2468 aaKnown RBP13.46□□□□□ -0.26
SS18-215ENST00000580642 SPTA1P02549 2419 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 PIEZO2Q9H5I5 2752 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 SMIM31A0A1B0GVY4 71 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 TNFSF13O75888 250 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 ADRA2AP08913 450 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 SPARCP09486 303 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 OR8G3PP0DMU2 310 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 GLI4P10075 376 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 CD53P19397 219 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 PAX7P23759 505 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 DCTDP32321 178 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 OPRM1P35372 400 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 MAP2K4P45985 399 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 AQP6Q13520 282 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 P2RY6Q15077 328 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 NEDD8Q15843 81 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 CEACAM16Q2WEN9 425 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 CCDC58Q4VC31 144 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 ZNF684Q5T5D7 378 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 GPR141Q7Z602 305 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 LHFPL3Q86UP9 236 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 C1orf162Q8NEQ5 155 aaPredicted RBP13.45□□□□□ -0.26
SS18-215ENST00000580642 GJC3Q8NFK1 279 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 OR2AJ1Q8NGZ0 328 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 OR52N5Q8NH56 324 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 ALKBH3Q96Q83 286 aaPredicted RBP13.45□□□□□ -0.26
SS18-215ENST00000580642 MGLLQ99685 303 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 KCNN2Q9H2S1 579 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 NIPAL2Q9H841 368 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 TRIM36Q9NQ86 728 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 ALPK2Q86TB3 2170 aa13.45□□□□□ -0.26
SS18-215ENST00000580642 ARPC4-TTLL3A0A0A6YYG9 625 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms