RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 POP5Q969H6 163 aaKnown RBP12.78□□□□□ -0.36
SS18-212ENST00000579061 MRPL37Q9BZE1 423 aaKnown RBP12.78□□□□□ -0.36
SS18-212ENST00000579061 BCL2L14Q9BZR8 327 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 C1orf21Q9H246 121 aa12.78□□□□□ -0.36
SS18-212ENST00000579061 PRPF19Q9UMS4 504 aaKnown RBP12.78□□□□□ -0.36
SS18-212ENST00000579061 LOC390937A0A1W2PQ73 354 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 KRT36O76013 467 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 TXNDC12O95881 172 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 T-ENOLP0DO92 83 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 MSR1P21757 451 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 RRM2P31350 389 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 IFNGR2P38484 337 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 RAD52P43351 418 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 RPS6KA3P51812 740 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 HMGA2P52926 109 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 FXYD6P3P58550 94 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 KRR1Q13601 381 aaKnown RBP12.77□□□□□ -0.37
SS18-212ENST00000579061 LCN8Q6JVE9 175 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 RGS7BPQ6MZT1 257 aaPredicted RBP12.77□□□□□ -0.37
SS18-212ENST00000579061 SMARCD3Q6STE5 483 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 ZER1Q7Z7L7 766 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 ADCK1Q86TW2 530 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 ALDH16A1Q8IZ83 802 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 MAPK1IP1LQ8NDC0 245 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 MS4A5Q9H3V2 200 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 DYNLRB1Q9NP97 96 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 VSX1Q9NZR4 365 aaPredicted RBP12.77□□□□□ -0.37
SS18-212ENST00000579061 TMCC3Q9ULS5 477 aa12.77□□□□□ -0.37
SS18-212ENST00000579061 TEX13CA0A0J9YWL9 993 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 A0A1W2PPL8 197 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 VWC2LB2RUY7 222 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 H7C1C5 153 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 M0R233 179 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 IMPA2O14732 288 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 TLX2O43763 284 aaPredicted RBP12.76□□□□□ -0.37
SS18-212ENST00000579061 CD5LO43866 347 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 OR10H3O60404 316 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 LY6HO94772 140 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 TP53P04637 393 aaPredicted RBP12.76□□□□□ -0.37
SS18-212ENST00000579061 IGFBP1P08833 259 aaPredicted RBP12.76□□□□□ -0.37
SS18-212ENST00000579061 ATP6V1B2P21281 511 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 FPR3P25089 353 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 APEX1P27695 318 aaKnown RBP12.76□□□□□ -0.37
SS18-212ENST00000579061 LAP3P28838 519 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 MAGEA2P43356 314 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 UCP2P55851 309 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 SELENOVP59797 346 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 LCN6P62502 163 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 PSG4Q00888 419 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 TRIM25Q14258 630 aaKnown RBP12.76□□□□□ -0.37
SS18-212ENST00000579061 C1orf94Q6P1W5 598 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 CYP2R1Q6VVX0 501 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 THSD4Q6ZMP0 1018 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 RINLQ6ZS11 566 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 C1orf174Q8IYL3 243 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 PAQR4Q8N4S7 273 aaPredicted RBP12.76□□□□□ -0.37
SS18-212ENST00000579061 LINC00471Q8N535 108 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 ZNF540Q8NDQ6 660 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 CPEB3Q8NE35 698 aaKnown RBP12.76□□□□□ -0.37
SS18-212ENST00000579061 POM121L2Q96KW2 1035 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 GPA33Q99795 319 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 PIMREGQ9BSJ6 248 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 OR2H1Q9GZK4 316 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 MAGIXQ9H6Y5 334 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 POLE4Q9NR33 117 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 TIMM10BQ9Y5J6 103 aa12.76□□□□□ -0.37
SS18-212ENST00000579061 IGLV3-9A0A075B6K5 115 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 TCRBV5S2A0A599 114 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 C12orf71A8MTZ7 269 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 ARPC3O15145 178 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 KHDRBS3O75525 346 aaKnown RBP12.75□□□□□ -0.37
SS18-212ENST00000579061 ADRA2AP08913 450 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 CCL2P13500 99 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 ZNF250P15622 560 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 STOMP27105 288 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 GSSP48637 474 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 PPP2R2BQ00005 443 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 ENDOGQ14249 297 aaKnown RBP12.75□□□□□ -0.37
SS18-212ENST00000579061 RFX4Q33E94 735 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 UNQ6126/PRO20091Q6UXV3 157 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 DHFR2Q86XF0 187 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 FANK1Q8TC84 345 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 GNPDA2Q8TDQ7 276 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 C11orf40Q8WZ69 217 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 RASD2Q96D21 266 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 SNX18Q96RF0 628 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 SYT3Q9BQG1 590 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 ZNF416Q9BWM5 594 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 WNT5BQ9H1J7 359 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 OR52D1Q9H346 318 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 TAS2R1Q9NYW7 299 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 REV1Q9UBZ9 1251 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 GPR160Q9UJ42 338 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 IER3IP1Q9Y5U9 82 aa12.75□□□□□ -0.37
SS18-212ENST00000579061 SONP18583 2426 aaKnown RBP12.74□□□□□ -0.37
SS18-212ENST00000579061 SOCS2O14508 198 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 ICMTO60725 284 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 LCKP06239 509 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 FAM157BP0CG42 384 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 COX5BP10606 129 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms