RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ADAMTS16Q8TE57 1224 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 TXNDC15Q96J42 360 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 POM121L2Q96KW2 1035 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 SSX3Q99909 188 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 FAM234AQ9H0X4 552 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 ZNF726A6NNF4 738 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 CHST1O43916 411 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 ICMTO60725 284 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 EEF1B2P24534 225 aaKnown RBP13.15□□□□□ -0.3
VPS53-218ENST00000575207 RPL3P39023 403 aaKnown RBP13.15□□□□□ -0.3
VPS53-218ENST00000575207 GATA4P43694 442 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 CSNK1A1P48729 337 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 PPP1CBP62140 327 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 RPL38P63173 70 aaKnown RBP13.15□□□□□ -0.3
VPS53-218ENST00000575207 HBA1P69905 142 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 GUCA2AQ02747 115 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 EGR4Q05215 589 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 GNA13Q14344 377 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 RFTN2Q52LD8 501 aaPredicted RBP13.15□□□□□ -0.3
VPS53-218ENST00000575207 FAM201AQ5SY85 155 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 MRPL2Q5T653 305 aaKnown RBP13.15□□□□□ -0.3
VPS53-218ENST00000575207 SLC16A14Q7RTX9 510 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 CLEC4FQ8N1N0 589 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 OR4K5Q8NGD3 323 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 MEGF9Q9H1U4 602 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 ATAD3AQ9NVI7 634 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 ERVK-18Q9QC07 812 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 CTSZQ9UBR2 303 aa13.15□□□□□ -0.3
VPS53-218ENST00000575207 MS4A18H0YCH9 400 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 HPRP00739 348 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 MMP7P09237 267 aaPredicted RBP13.14□□□□□ -0.31
VPS53-218ENST00000575207 GKN3PP0CG01 181 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 NCF2P19878 526 aaPredicted RBP13.14□□□□□ -0.31
VPS53-218ENST00000575207 STOMP27105 288 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 VEGFCP49767 419 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 HSF2Q03933 536 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 MS4A18Q3C1V0 323 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 C11orf91Q3C1V1 193 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 GPAT3Q53EU6 434 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 WDR88Q6ZMY6 472 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 LIAT1Q6ZQX7 453 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 MRPL41Q8IXM3 137 aaKnown RBP13.14□□□□□ -0.31
VPS53-218ENST00000575207 NATD1Q8N6N6 113 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 ADPRHL1Q8NDY3 354 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 ABHD4Q8TB40 342 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 MIPOL1Q8TD10 442 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 L3HYPDHQ96EM0 354 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 DPY30Q9C005 99 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 GSTO2Q9H4Y5 243 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 C20orf141Q9NUB4 165 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 TSSC4Q9Y5U2 329 aaPredicted RBP13.14□□□□□ -0.31
VPS53-218ENST00000575207 MUC4Q99102 2169 aa13.14□□□□□ -0.31
VPS53-218ENST00000575207 RNF103-CHMP3A0A140T963 221 aa13.13□□□□□ -0.31
VPS53-218ENST00000575207 SLC28A1O00337 649 aa13.13□□□□□ -0.31
VPS53-218ENST00000575207 OR2T1O43869 369 aa13.13□□□□□ -0.31
VPS53-218ENST00000575207 PEX14O75381 377 aa13.13□□□□□ -0.31
VPS53-218ENST00000575207 NQO1P15559 274 aaKnown RBP13.13□□□□□ -0.31
VPS53-218ENST00000575207 GRPRP30550 384 aa13.13□□□□□ -0.31
VPS53-218ENST00000575207 SAA4P35542 130 aa13.13□□□□□ -0.31
VPS53-218ENST00000575207 ACAA2P42765 397 aaKnown RBP13.13□□□□□ -0.31
VPS53-218ENST00000575207 TNFAIP8L2Q6P589 184 aaPredicted RBP13.13□□□□□ -0.31
VPS53-218ENST00000575207 C1orf87Q8N0U7 546 aa13.13□□□□□ -0.31
VPS53-218ENST00000575207 PRR25Q96S07 402 aa13.13□□□□□ -0.31
VPS53-218ENST00000575207 TMED5Q9Y3A6 229 aa13.13□□□□□ -0.31
VPS53-218ENST00000575207 LOC100509620A0A075B734 347 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 MEIOCA2RUB1 952 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 C5orf49A4QMS7 147 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 GSTA1P08263 222 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 INHBAP08476 426 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 QDPRP09417 244 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 IL7RP16871 459 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 ATP5F1P24539 256 aaPredicted RBP13.12□□□□□ -0.31
VPS53-218ENST00000575207 PRKAA2P54646 552 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 C2orf54Q08AI8 447 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 CALCOCO2Q13137 446 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 AANATQ16613 207 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 PABPC1L2AQ5JQF8 200 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 FAM69AQ5T7M9 428 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 SATL1Q86VE3 508 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 SLC22A9Q8IVM8 553 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 OR2T11Q8NH01 316 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 RLIMQ9NVW2 624 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 CHST2Q9Y4C5 530 aa13.12□□□□□ -0.31
VPS53-218ENST00000575207 LRRC30A6NM36 301 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 KITLGP21583 273 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 ANP32AP39687 249 aaKnown RBP13.11□□□□□ -0.31
VPS53-218ENST00000575207 MAGEA4P43358 317 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 OR5AU1Q8NGC0 362 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 TMEM54Q969K7 222 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 TAAR8Q969N4 342 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 MEGF10Q96KG7 1140 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 ZNF607Q96SK3 696 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 NKX3-1Q99801 234 aaPredicted RBP13.11□□□□□ -0.31
VPS53-218ENST00000575207 MYLK2Q9H1R3 596 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 MUC13Q9H3R2 512 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 ZMAT4Q9H898 229 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 SMURF1Q9HCE7 757 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 TBCCD1Q9NVR7 557 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 MKS1Q9NXB0 559 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 GLTPQ9NZD2 209 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms