RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 MKL2Q9ULH7 1088 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 GTF2A1LQ9UNN4 478 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 ASXL3Q9C0F0 2248 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 EIF2B1Q14232 305 aaKnown RBP20.48■□□□□ 0.87
VPS53-211ENST00000571805 MELKQ14680 651 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 TMEM225Q6GV28 225 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 OR7E24Q6IFN5 339 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 KCTD18Q6PI47 426 aaPredicted RBP20.48■□□□□ 0.87
VPS53-211ENST00000571805 RFPL4BQ6ZWI9 263 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 OR1J4Q8NGS1 313 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 STK35Q8TDR2 534 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 PCNPQ8WW12 178 aaKnown RBP20.48■□□□□ 0.87
VPS53-211ENST00000571805 GINS4Q9BRT9 223 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 CDV3Q9UKY7 258 aaKnown RBP20.48■□□□□ 0.87
VPS53-211ENST00000571805 PPIEQ9UNP9 301 aaKnown RBP20.48■□□□□ 0.87
VPS53-211ENST00000571805 TMEM272A0A1B0GTI8 110 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 OR6C76A6NM76 312 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 OPCMLQ14982 345 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 NHLRC1Q6VVB1 395 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 LANCL3Q6ZV70 420 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 NDUFAF7Q7L592 441 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 CARFQ8N187 725 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 PLPP7Q8NBV4 271 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 NKX3-1Q99801 234 aaPredicted RBP20.47■□□□□ 0.87
VPS53-211ENST00000571805 DHDHQ9UQ10 334 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 LRP12Q9Y561 859 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 MTCH2Q9Y6C9 303 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 FREM3P0C091 2139 aa20.47■□□□□ 0.87
VPS53-211ENST00000571805 FTCDNL1E5RQL4 147 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 MPZL1O95297 269 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 CD37P11049 281 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 HLA-DOBP13765 273 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 RIDAP52758 137 aaKnown RBP20.46■□□□□ 0.87
VPS53-211ENST00000571805 ARHGAP40Q5TG30 622 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 OR5M10Q6IEU7 315 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 OR6N1Q8NGY5 312 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 TMPRSS13Q9BYE2 586 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 MAB21L2Q9Y586 359 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 MYO15AQ9UKN7 3530 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 SRSF10O75494 262 aaKnown RBP20.46■□□□□ 0.87
VPS53-211ENST00000571805 IGFBP3P17936 291 aaPredicted RBP20.46■□□□□ 0.87
VPS53-211ENST00000571805 PRSS3P35030 304 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 CADM4Q8NFZ8 388 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 DPYSL5Q9BPU6 564 aa20.46■□□□□ 0.87
VPS53-211ENST00000571805 COA3Q9Y2R0 106 aaPredicted RBP20.46■□□□□ 0.87
VPS53-211ENST00000571805 A0A1W2PPC1 479 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 AHSA1O95433 338 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 AKAIN1P0CW23 69 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 SRFP11831 508 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 GTF2F2P13984 249 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 IL11P20809 199 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 C2orf68Q2NKX9 166 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 SIGIRRQ6IA17 410 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 PLXDC1Q8IUK5 500 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 SLC41A2Q96JW4 573 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 SEMA5BQ9P283 1151 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 UNC13CQ8NB66 2214 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 A0A1B0GX78 115 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 MEIS3P1A6NDR6 274 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 PIAS2O75928 621 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 PDGFAP04085 211 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 NFYAP23511 347 aaPredicted RBP20.45■□□□□ 0.86
VPS53-211ENST00000571805 KDM8Q8N371 416 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 ZNF454Q8N9F8 522 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 CLEC1AQ8NC01 280 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 OR51S1Q8NGJ8 323 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 OR52N5Q8NH56 324 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 GPX8Q8TED1 209 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 ELMOD3Q96FG2 381 aa20.45■□□□□ 0.86
VPS53-211ENST00000571805 PRMT8Q9NR22 394 aaPredicted RBP20.45■□□□□ 0.86
VPS53-211ENST00000571805 ABCA7Q8IZY2 2146 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 OR2T1O43869 369 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 CRABP1P29762 137 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 SLC26A5P58743 744 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 ARPC4P59998 168 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 GLO1Q04760 184 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 TOMM20Q15388 145 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 COMMD7Q86VX2 200 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 NPAS1Q99742 590 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 GSX2Q9BZM3 304 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 ATG5Q9H1Y0 275 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 TAS2R4Q9NYW5 299 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 SPAG17Q6Q759 2223 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 MCRIP1C9JLW8 97 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 MS4A18H0YCH9 400 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 HRGP04196 525 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 CD3DP04234 171 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 DLX5P56178 289 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 FOXL2P58012 376 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 MS4A18Q3C1V0 323 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 PLPP5Q8NEB5 264 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 SFXN2Q96NB2 322 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 CTSFQ9UBX1 484 aa20.44■□□□□ 0.86
VPS53-211ENST00000571805 SPEGQ15772 3267 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 NUDT21O43809 227 aaKnown RBP20.43■□□□□ 0.86
VPS53-211ENST00000571805 FSTP19883 344 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 PTGS2P35354 604 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 CSNK1EP49674 416 aaKnown RBP20.43■□□□□ 0.86
VPS53-211ENST00000571805 H2BFSP57053 126 aa20.43■□□□□ 0.86
VPS53-211ENST00000571805 GLT8D1Q68CQ7 371 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms