RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CARTPTQ16568 116 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 MESTQ5EB52 335 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 RGS7BPQ6MZT1 257 aaPredicted RBP17.43■□□□□ 0.38
CLK3-225ENST00000569063 ZNF540Q8NDQ6 660 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 MCUR1Q96AQ8 359 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 RSRC1Q96IZ7 334 aaKnown RBP17.43■□□□□ 0.38
CLK3-225ENST00000569063 ZNF570Q96NI8 536 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 IL1RAPQ9NPH3 570 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 NRIP3Q9NQ35 241 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 MYEF2Q9P2K5 600 aaKnown RBP17.43■□□□□ 0.38
CLK3-225ENST00000569063 FZR1Q9UM11 496 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 PRSS37A4D1T9 235 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 XKRYO14609 159 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 GADD45GO95257 159 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 STAMBPO95630 424 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 ZNF250P15622 560 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 GIFP27352 417 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 SDHAP31040 664 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 FXYD6P3P58550 94 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 PCBD1P61457 104 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 GPR139Q6DWJ6 353 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 ZNF786Q8N393 782 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 POM121L2Q96KW2 1035 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 BCL2L14Q9BZR8 327 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 YAE1D1Q9NRH1 226 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 DUSP13Q9UII6 198 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 AURKCQ9UQB9 309 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 TIMM10BQ9Y5J6 103 aa17.42■□□□□ 0.38
CLK3-225ENST00000569063 TEX13CA0A0J9YWL9 993 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 A0A1W2PPL8 197 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 UNC119BA6NIH7 251 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 B2RBV5 119 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 H7C1C5 153 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 FABP3P05413 133 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 MSR1P21757 451 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 ALDH3B1P43353 468 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 LCN6P62502 163 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 SPIBQ01892 262 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 C6orf52Q5T4I8 152 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 THSD4Q6ZMP0 1018 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 DPY19L2P2Q6ZN68 376 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 ZER1Q7Z7L7 766 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 SYT9Q86SS6 491 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 AKR7LQ8NHP1 331 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 UBASH3BQ8TF42 649 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 C11orf40Q8WZ69 217 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 NSL1Q96IY1 281 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 GPA33Q99795 319 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 WACQ9BTA9 647 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 OR2H1Q9GZK4 316 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 TPK1Q9H3S4 243 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 POLE4Q9NR33 117 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 TLN2Q9Y4G6 2542 aa17.41■□□□□ 0.38
CLK3-225ENST00000569063 IGLV3-9A0A075B6K5 115 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 LOC100509620A0A075B734 347 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 C12orf71A8MTZ7 269 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 A8MV72 311 aaPredicted RBP17.4■□□□□ 0.38
CLK3-225ENST00000569063 SCG5P05408 212 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 LCKP06239 509 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 IGHV4-31P0DP07 118 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 SELENOVP59797 346 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 KRR1Q13601 381 aaKnown RBP17.4■□□□□ 0.38
CLK3-225ENST00000569063 ENDOGQ14249 297 aaKnown RBP17.4■□□□□ 0.38
CLK3-225ENST00000569063 GGTLC2Q14390 218 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 CYB5R2Q6BCY4 276 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 SMARCD3Q6STE5 483 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 PRIMA1Q86XR5 153 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 ALDH16A1Q8IZ83 802 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 ARHGAP24Q8N264 748 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 SYNPRQ8TBG9 265 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 RASD2Q96D21 266 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 ZNF416Q9BWM5 594 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 BPESC1Q9GZL8 116 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 WNT5BQ9H1J7 359 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 OR51B6Q9H340 312 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 ACTR3BQ9P1U1 418 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 IL20RAQ9UHF4 553 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 GPR160Q9UJ42 338 aa17.4■□□□□ 0.38
CLK3-225ENST00000569063 YLPM1P49750 1951 aaKnown RBP17.39■□□□□ 0.37
CLK3-225ENST00000569063 ABCA1O95477 2261 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 IGHV4-61A0A0C4DH41 118 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 A0A1W2PPW3 197 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 C5orf49A4QMS7 147 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 TXNDC12O95881 172 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 CLPTM1O96005 669 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 APEHP13798 732 aaKnown RBP17.39■□□□□ 0.37
CLK3-225ENST00000569063 CCNOP22674 350 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 RRM2P31350 389 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 GDI2P50395 445 aaKnown RBP17.39■□□□□ 0.37
CLK3-225ENST00000569063 RPS6KA3P51812 740 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 KLF3P57682 345 aaPredicted RBP17.39■□□□□ 0.37
CLK3-225ENST00000569063 ERVS71-1P61550 626 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 RIN1Q13671 783 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 MAD2L1BPQ15013 274 aaPredicted RBP17.39■□□□□ 0.37
CLK3-225ENST00000569063 ADCK1Q86TW2 530 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 ZDHHC21Q8IVQ6 265 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 CCDC197Q8NCU1 140 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 SLCO1C1Q9NYB5 712 aa17.39■□□□□ 0.37
CLK3-225ENST00000569063 VSX1Q9NZR4 365 aaPredicted RBP17.39■□□□□ 0.37
CLK3-225ENST00000569063 IER3IP1Q9Y5U9 82 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms