RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 DAOAP59103 153 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ERVFC1-1P60608 527 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ZP1P60852 638 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ID2Q02363 134 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MXD1Q05195 221 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TCP10Q12799 353 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 PTP4A2Q12974 167 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 UBE2V1Q13404 147 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR5I1Q13606 314 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 FHL3Q13643 280 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 RUNX2Q13950 521 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 NDUFA9Q16795 377 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MEP1BQ16820 701 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 CYP51A1Q16850 503 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 DUSP28Q4G0W2 176 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OCIAD2Q56VL3 154 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TCTEX1D4Q5JR98 221 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 DCST1Q5T197 706 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 GPR157Q5UAW9 335 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TMEM244Q5VVB8 128 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 SAMD13Q5VXD3 122 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 STEAP4Q687X5 459 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 FAM45BPQ6NSW5 357 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 C11orf87Q6NUJ2 197 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 C8orf82Q6P1X6 216 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 FIGLAQ6QHK4 219 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 EPGNQ6UW88 154 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ALKAL2Q6UX46 152 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ALKAL1Q6UXT8 129 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 GSG1LQ6UXU4 331 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ZNF793Q6ZN11 406 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MOB3CQ70IA8 216 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 SYT13Q7L8C5 426 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ZNF571Q7Z3V5 609 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 NUFIP2Q7Z417 695 aaKnown RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 OAFQ86UD1 273 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 SLC26A11Q86WA9 606 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 CALHM1Q8IU99 346 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MFSD6LQ8IWD5 586 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 LAX1Q8IWV1 398 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ZC3H3Q8IXZ2 948 aaKnown RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 SLC34A3Q8N130 599 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 HIST3H2BBQ8N257 126 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ZNF664Q8N3J9 261 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 LMNTD1Q8N9Z9 388 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 NHLRC2Q8NBF2 726 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ZNF555Q8NEP9 628 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR4F6Q8NGB9 312 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR4E2Q8NGC2 313 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR9Q2Q8NGE9 314 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR52B6Q8NGF0 335 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR56A4Q8NGH8 313 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR1L6Q8NGR2 347 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR13C5Q8NGS8 318 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR9A4Q8NGU2 314 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR10K1Q8NGX5 313 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OLIG1Q8TAK6 271 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 LMO3Q8TAP4 145 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 FAM45AQ8TCE6 357 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 GNPDA2Q8TDQ7 276 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 GPR151Q8TDV0 419 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 CANT1Q8WVQ1 401 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ASB13Q8WXK3 278 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ARNTL2Q8WYA1 636 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 RGP1Q92546 391 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 MRPS31Q92665 395 aaKnown RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 RAD54LQ92698 747 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 TOMM40LQ969M1 308 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 FAM162AQ96A26 154 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ANKRD9Q96BM1 317 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 PYCR2Q96C36 320 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 RNFT2Q96EX2 444 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 GALNT14Q96FL9 552 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 EEF2KMTQ96G04 330 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 SMARCD1Q96GM5 515 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 C5orf30Q96GV9 206 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 FER1L6-AS2Q96M78 137 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR52E6Q96RD3 313 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 GFM1Q96RP9 751 aaKnown RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 MBOAT4Q96T53 435 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 PARK7Q99497 189 aaKnown RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 S100A13Q99584 98 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 CITED1Q99966 193 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OMDQ99983 421 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 SULT4A1Q9BR01 284 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 NAA11Q9BSU3 229 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 MSTO1Q9BUK6 570 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ULBP1Q9BZM6 244 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ACTR3CQ9C0K3 210 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 RAB1BQ9H0U4 201 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 C20orf85Q9H1P6 137 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MAGEH1Q9H213 219 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 OR51J1Q9H342 316 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 UBQLN3Q9H347 655 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 AUNIPQ9H7T9 357 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MTHFD2LQ9H903 347 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 HRASLSQ9HDD0 168 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 ACKR4Q9NPB9 350 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MRPL22Q9NWU5 206 aaKnown RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 CNIH4Q9P003 139 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms