RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 ITPR3Q14573 2671 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 A0A1W2PRG6 482 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 LRRN3E7EW58 273 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 RPL36A-HNRNPH2H7BZ11 118 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 PLPP3O14495 311 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 RNF13O43567 381 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 TRAF3IP2O43734 574 aaPredicted RBP11.76□□□□□ -0.53
CLK3-218ENST00000566926 PRKYO43930 277 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 FAM20BO75063 409 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 ZNF432O94892 652 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 IGHMP01871 453 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 EEF1B2P24534 225 aaKnown RBP11.76□□□□□ -0.53
CLK3-218ENST00000566926 PTAFRP25105 342 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 AQP2P41181 271 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 FOXG1P55316 489 aaPredicted RBP11.76□□□□□ -0.53
CLK3-218ENST00000566926 SLC35A2P78381 396 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 POU3F1Q03052 451 aaPredicted RBP11.76□□□□□ -0.53
CLK3-218ENST00000566926 BSPH1Q075Z2 132 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 BLMHQ13867 455 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 ZNF773Q6PK81 442 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 LRRC75AQ8NAA5 344 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 BPIFB6Q8NFQ5 453 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 AKAP1Q92667 903 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLK3-218ENST00000566926 FBXW5Q969U6 566 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 ERMAPQ96PL5 475 aaPredicted RBP11.76□□□□□ -0.53
CLK3-218ENST00000566926 ALKBH3Q96Q83 286 aaPredicted RBP11.76□□□□□ -0.53
CLK3-218ENST00000566926 SNX18Q96RF0 628 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 IL4I1Q96RQ9 567 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 KATNB1Q9BVA0 655 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 DUSP21Q9H596 190 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 INIPQ9NRY2 104 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 H2AFY2Q9P0M6 372 aaPredicted RBP11.76□□□□□ -0.53
CLK3-218ENST00000566926 GRHPRQ9UBQ7 328 aa11.76□□□□□ -0.53
CLK3-218ENST00000566926 DPRXA6NFQ7 191 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 A6NIZ1 184 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 SLC22A31A6NKX4 558 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 TRIM64CA6NLI5 447 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 MCIDASD6RGH6 385 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 ARHGEF9O43307 516 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 AHCYL1O43865 530 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 SMPD2O60906 423 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 UPK3AO75631 287 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 PPP1R3DO95685 299 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 CLPTM1O96005 669 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 PLAUP00749 431 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 CTXN1P60606 82 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 UBE2NP61088 152 aaKnown RBP11.75□□□□□ -0.53
CLK3-218ENST00000566926 RAP1BP61224 184 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 RAP1AP62834 184 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 ROR2Q01974 943 aaKnown RBP11.75□□□□□ -0.53
CLK3-218ENST00000566926 LGALS3BPQ08380 585 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 APOFQ13790 326 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 LAIR2Q6ISS4 152 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 TMEM154Q6P9G4 183 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 SEZ6L2Q6UXD5 910 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 LRRC75A-AS1Q8N1F1 130 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 ZNF540Q8NDQ6 660 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 OR1K1Q8NGR3 316 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 TMEM171Q8WVE6 324 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 ADAD1Q96M93 576 aaKnown RBP11.75□□□□□ -0.53
CLK3-218ENST00000566926 OR2M2Q96R28 347 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 TAS2R5Q9NYW4 299 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 IL20RAQ9UHF4 553 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 PSORS1C1Q9UIG5 152 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 SNX5Q9Y5X3 404 aa11.75□□□□□ -0.53
CLK3-218ENST00000566926 USF3Q68DE3 2245 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 SLC35F4A4IF30 521 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 PRR23D1E9PI22 279 aaPredicted RBP11.74□□□□□ -0.53
CLK3-218ENST00000566926 C11orf98E9PRG8 122 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 M0R1B8 84 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 XKRYO14609 159 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 ABCD4O14678 606 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 RGS10O43665 173 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 ENTPD6O75354 484 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 PRR23D2P0DMB1 279 aaPredicted RBP11.74□□□□□ -0.53
CLK3-218ENST00000566926 HTR1FP30939 366 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 FMO3P31513 532 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 CENPAP49450 140 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 ZNF83P51522 516 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 MVKQ03426 396 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 RAB40BQ12829 278 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 POU4F2Q12837 409 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 ZNF672Q499Z4 452 aaPredicted RBP11.74□□□□□ -0.53
CLK3-218ENST00000566926 KLHL22Q53GT1 634 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 AADACL4Q5VUY2 407 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 SHEQ5VZ18 495 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 ANKRD16Q6P6B7 361 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 CXXC5Q7LFL8 322 aaKnown RBP11.74□□□□□ -0.53
CLK3-218ENST00000566926 PRSS48Q7RTY5 328 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 FAM122BQ7Z309 247 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 JAZF1Q86VZ6 243 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 CCDC36Q8IYA8 594 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 TMEM123Q8N131 208 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 SVOPQ8N4V2 548 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 WDR31Q8NA23 367 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 MOSPD2Q8NHP6 518 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 UBE2FQ969M7 185 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 ZNF582Q96NG8 517 aaPredicted RBP11.74□□□□□ -0.53
CLK3-218ENST00000566926 COPS4Q9BT78 406 aa11.74□□□□□ -0.53
CLK3-218ENST00000566926 TXNIPQ9H3M7 391 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms