RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 CCDC74BQ96LY2 380 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 OR6C1Q96RD1 312 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 AMELYQ99218 206 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 SPSB2Q99619 263 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 SMAD5Q99717 465 aaKnown RBP5.61□□□□□ -1.51
CLN3-223ENST00000566472 CMKLR1Q99788 373 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 OR11A1Q9GZK7 315 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 SLCO5A1Q9H2Y9 848 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 WDR54Q9H977 334 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 ZFP64Q9NPA5 681 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 PRMT8Q9NR22 394 aaPredicted RBP5.61□□□□□ -1.51
CLN3-223ENST00000566472 PPP4R1LQ9P1A2 415 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 MTFP1Q9UDX5 166 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 ZNF222Q9UK12 451 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 RPH3AQ9Y2J0 694 aaPredicted RBP5.61□□□□□ -1.51
CLN3-223ENST00000566472 COA3Q9Y2R0 106 aaPredicted RBP5.61□□□□□ -1.51
CLN3-223ENST00000566472 BOLA1Q9Y3E2 137 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 HSPB11Q9Y547 144 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 LRP12Q9Y561 859 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 WIF1Q9Y5W5 379 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 U3KQA8 63 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 A0A087WZY1 265 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 LOC102723996A0A087X1L8 192 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 IGHV3-20A0A0C4DH32 117 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 IGHV5-10-1A0A0J9YXX1 117 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 A0A1B0GTH9 108 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 LOC102725191A0A1B0GVB3 256 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 LOC107986453A0A1B0GWG9 222 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 A0A1W2PQM1 296 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 CIB4A0PJX0 185 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 ANKRD34BA5PLL1 514 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 TUBAL3A6NHL2 446 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 TMEM200CA6NKL6 621 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 C17orf51A8MQB3 221 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 TP53I11O14683 189 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 SSNA1O43805 119 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 GMFGO60234 142 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 GMDSO60547 372 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 ICMTO60725 284 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 SCGNO76038 276 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 DKK1O94907 266 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 GPANK1O95872 356 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 PNPP00491 289 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 MAS1P04201 325 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 TPOP07202 933 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 GIPP09681 153 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 AKAIN1P0CW23 69 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 RAB6AP20340 208 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 PTGDSP41222 190 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 EIF1P41567 113 aaKnown RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 MAGEB1P43366 347 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 DNASE1L1P49184 302 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 POU3F4P49335 361 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 DHPSP49366 369 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 DUSP3P51452 185 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 MMP16P51512 607 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 GNG2P59768 71 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 RAP2BP61225 183 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 CCL7P80098 99 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 GALK2Q01415 458 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 DHODHQ02127 395 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 TLE3Q04726 772 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 MFGE8Q08431 387 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 EIF3IQ13347 325 aaKnown RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 SNTA1Q13424 505 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 IL11RAQ14626 422 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 RBMS2Q15434 407 aaKnown RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 PEAR1Q5VY43 1037 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 ZNF626Q68DY1 528 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 OR7E24Q6IFN5 339 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 SLC25A25Q6KCM7 469 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 MRPL14Q6P1L8 145 aaKnown RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 C3orf33Q6P1S2 294 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 GUSBP11Q6P575 273 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 FAM198BQ6UWH4 519 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 NHLRC1Q6VVB1 395 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 RHOUQ7L0Q8 258 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 NDUFAF7Q7L592 441 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 TMPRSS9Q7Z410 1059 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 ADGRE4PQ86SQ3 457 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 PPP1R3BQ86XI6 285 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 FADS6Q8N9I5 356 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 NOXO1Q8NFA2 376 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 OR10H5Q8NGA6 315 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 OR51A4Q8NGJ6 313 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 OR6N1Q8NGY5 312 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 ST7LQ8TDW4 575 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 ASB5Q8WWX0 329 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 SLC25A28Q96A46 364 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 DACT3Q96B18 629 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 FAM3DQ96BQ1 224 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 ZBTB8AQ96BR9 441 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 SPACA9Q96E40 222 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 C5orf34Q96MH7 638 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 RBP7Q96R05 134 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 NUDT16L1Q9BRJ7 211 aaKnown RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 CRB3Q9BUF7 120 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 ZNF436Q9C0F3 470 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 ALX4Q9H161 411 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 G6PC2Q9NQR9 355 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms