RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TMEM272A0A1B0GTI8 110 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 A0A1B0GW55 424 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 OR6C6A6NF89 314 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 FAM90A8PA6NJQ4 464 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 HSPB2A8KAH6 182 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 CYSRT1A8MQ03 144 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 PPP5D1E7EU14 171 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 SLC17A3O00476 420 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 LDB2O43679 373 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 CDC40O60508 579 aaKnown RBP eCLIP4.52□□□□□ -1.69
VPS35-205ENST00000563984 SC5DO75845 299 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 CEACAM4O75871 244 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 OR2B3O76000 313 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 TMEM50AO95807 157 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 C1QCP02747 245 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 FAM90A13PP0C7W8 464 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 FAM90A24PP0C7X0 464 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 DUX4L2P0CJ85 424 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 DUX4L3P0CJ86 424 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 DUX4L4P0CJ87 422 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 DUX4L5P0CJ88 424 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 DUX4L6P0CJ89 424 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 DUX4L7P0CJ90 424 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 CELP19835 753 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 PVALBP20472 110 aaPredicted RBP4.52□□□□□ -1.69
VPS35-205ENST00000563984 S100A7P31151 101 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 PRDX2P32119 198 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 CCKARP32238 428 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 AVPR1AP37288 418 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 NUMBP49757 651 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 TNFSF10P50591 281 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 RORCP51449 518 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 RAG2P55895 527 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 RAB25P57735 213 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 DEFA1P59665 94 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 DEFA3P59666 94 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 OR2B8PP59922 312 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 ERVPABLB-1P60509 514 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 CKS1BP61024 79 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 MAXP61244 160 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 ERVK11-1P61568 191 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 SHC2P98077 582 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 EGR4Q05215 589 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 ELAVL2Q12926 359 aaKnown RBP4.52□□□□□ -1.69
VPS35-205ENST00000563984 QPRTQ15274 297 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 FCN2Q15485 313 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 HSPB2Q16082 182 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 DGUOKQ16854 277 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 VWC2Q2TAL6 325 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 COL28A1Q2UY09 1125 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 SOWAHCQ53LP3 525 aaPredicted RBP4.52□□□□□ -1.69
VPS35-205ENST00000563984 ARL13AQ5H913 290 aaPredicted RBP4.52□□□□□ -1.69
VPS35-205ENST00000563984 TXNDC8Q6A555 127 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 ZNF770Q6IQ21 691 aaPredicted RBP4.52□□□□□ -1.69
VPS35-205ENST00000563984 Q7L0L9 218 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 SHFQ7M4L6 423 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 ZNF367Q7RTV3 350 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 SLC22A16Q86VW1 577 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 ZC3HC1Q86WB0 502 aaKnown RBP4.52□□□□□ -1.69
VPS35-205ENST00000563984 PTOV1Q86YD1 416 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 BAP18Q8IXM2 172 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 TCTE3Q8IZS6 198 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 PELI3Q8N2H9 469 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 DHRSXQ8N5I4 330 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 LRRC75AQ8NAA5 344 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 FAM110DQ8TAY7 271 aaPredicted RBP4.52□□□□□ -1.69
VPS35-205ENST00000563984 NUDCD2Q8WVJ2 157 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 FCAMRQ8WWV6 532 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 RAD54LQ92698 747 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 RORBQ92753 470 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 MYLPFQ96A32 169 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 ISOC1Q96CN7 298 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 NTNG2Q96CW9 530 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 LYZL4Q96KX0 146 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 PRMT6Q96LA8 375 aaPredicted RBP4.52□□□□□ -1.69
VPS35-205ENST00000563984 LRRC3BQ96PB8 259 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 OR2A14Q96R47 310 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 URM1Q9BTM9 101 aaKnown RBP4.52□□□□□ -1.69
VPS35-205ENST00000563984 DPH7Q9BTV6 452 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 RIOK2Q9BVS4 552 aaKnown RBP4.52□□□□□ -1.69
VPS35-205ENST00000563984 SEMA6AQ9H2E6 1030 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 PIGMQ9H3S5 423 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 FGF21Q9NSA1 209 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 CALML5Q9NZT1 146 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 TMEM216Q9P0N5 145 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 DUX4Q9UBX2 424 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 FBXL4Q9UKA2 621 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 GPR132Q9UNW8 380 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 FOXJ3Q9UPW0 622 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 TNNQ9UQP3 1299 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 LAMP3Q9UQV4 416 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 CMAHPQ9Y471 501 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 CAMSAP1Q5T5Y3 1602 aa4.52□□□□□ -1.69
VPS35-205ENST00000563984 UGGT2Q9NYU1 1516 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 ADAMTSL3P82987 1691 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 KIF1BO60333 1816 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 MLH3Q9UHC1 1453 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 TBC1D3EA0A087X179 549 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 A0A096LPI6 279 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 TGIF2-C20orf24A0A0A6YYL0 155 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms