RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ZNF99A8MXY4 864 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 E9PLD3 99 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 M0R3G1 203 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ZBTB5O15062 677 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 SSX5O60225 188 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 PSIP1O75475 530 aaKnown RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 AKAP3O75969 853 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 SNAPC5O75971 98 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 PROSCO94903 275 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 SLITRK3O94933 977 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 SEMA3DO95025 777 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 APOC1P02654 83 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 C1QAP02745 245 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 C1QBP02746 253 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ALPPP05187 535 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 PSKH1P11801 424 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF3P17036 446 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 PCMT1P22061 227 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 GLRA2P23416 452 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 DNAJB1P25685 340 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 HOXA6P31267 233 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 RFC4P35249 363 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 POLR2IP36954 125 aaKnown RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 NSFP46459 744 aaKnown RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 MARCKSL1P49006 195 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF136P52737 540 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 NKX2-5P52952 324 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 PLA2G16P53816 162 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 CASP9P55211 416 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 RAB25P57735 213 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 OR2B6P58173 313 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 FLI1Q01543 452 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 CNTN2Q02246 1040 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 MGAT3Q09327 533 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 PPP1R8Q12972 351 aaKnown RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 MRPL28Q13084 256 aaKnown RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 KCNJ11Q14654 390 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ANGPT1Q15389 498 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 NRF1Q16656 503 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 CYBRD1Q53TN4 286 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 Q5BKY6 102 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 TTC23Q5W5X9 447 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 KCTD11Q693B1 232 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 KDM4DQ6B0I6 523 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 FAM45BPQ6NSW5 357 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 DCUN1D2Q6PH85 259 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 COPS6Q7L5N1 327 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ERO1BQ86YB8 467 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 CPNE9Q8IYJ1 553 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 MICU2Q8IYU8 434 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 PDIK1LQ8N165 341 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 UBE2J2Q8N2K1 259 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 FBXO36Q8NEA4 188 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 OR2AP1Q8NGE2 309 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 TEX47Q8TBZ9 253 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 FAM45AQ8TCE6 357 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 SLC13A3Q8WWT9 602 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 BCL2L2Q92843 193 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 DLX4Q92988 240 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 YIPF5Q969M3 257 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 TESCQ96BS2 214 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 CCDC124Q96CT7 223 aaKnown RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 HAVCR1Q96D42 359 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 YIPF6Q96EC8 236 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 AURKBQ96GD4 344 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 CENPNQ96H22 339 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ELMO2Q96JJ3 720 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 TSNARE1Q96NA8 513 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 SERPINB11Q96P15 392 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 GAL3ST1Q99999 423 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 FTHL17Q9BXU8 183 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 C20orf27Q9GZN8 174 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 SLIRPQ9GZT3 109 aaKnown RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 SYNDIG1Q9H7V2 258 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 MRM3Q9HC36 420 aaKnown RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 C6orf50Q9HD87 102 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 FANCFQ9NPI8 374 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 MEPEQ9NQ76 525 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 IFT46Q9NQC8 304 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 XPNPEP1Q9NQW7 623 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ZC4H2Q9NQZ6 224 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 POLE3Q9NRF9 147 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 SDHAF3Q9NRP4 125 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 AGPAT4Q9NRZ5 378 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 MED9Q9NWA0 146 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 FBXL12Q9NXK8 326 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 SMPD3Q9NY59 655 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 PTTG3PQ9NZH4 202 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 MAT2BQ9NZL9 334 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 TMEM216Q9P0N5 145 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 GCNT4Q9P109 453 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ACTR3BQ9P1U1 418 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 DCDC2Q9UHG0 476 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ENOPH1Q9UHY7 261 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 PURGQ9UJV8 347 aaKnown RBP2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF225Q9UK10 706 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ACOT9Q9Y305 439 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 DHRS7Q9Y394 339 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms