RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ELSPBP1Q96BH3 223 aa15.84■□□□□ 0.13
SYNE3-202ENST00000553340 SLC41A2Q96JW4 573 aa15.84■□□□□ 0.13
SYNE3-202ENST00000553340 NKX3-1Q99801 234 aaPredicted RBP15.84■□□□□ 0.13
SYNE3-202ENST00000553340 GAL3ST1Q99999 423 aa15.84■□□□□ 0.13
SYNE3-202ENST00000553340 ZNF471Q9BX82 626 aaPredicted RBP15.84■□□□□ 0.13
SYNE3-202ENST00000553340 FBXO4Q9UKT5 387 aa15.84■□□□□ 0.13
SYNE3-202ENST00000553340 CD2P06729 351 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 GP1BAP07359 652 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 GDI1P31150 447 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 BTG2P78543 158 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 PABPC1L2AQ5JQF8 200 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 ASPHD2Q6ICH7 369 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 SLC35D2Q76EJ3 337 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 ZNF679Q8IYX0 411 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 LINC00518Q8N0U6 118 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 BPIFB2Q8N4F0 458 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 TMEM185AQ8NFB2 350 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 PIGMQ9H3S5 423 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 PRELID3BQ9Y3B1 194 aa15.83■□□□□ 0.13
SYNE3-202ENST00000553340 OR2W5A6NFC9 320 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 XKRYO14609 159 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 ZNF264O43296 627 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 HLA-AP01891 365 aaKnown RBP15.83■□□□□ 0.12
SYNE3-202ENST00000553340 TNFRSF4P43489 277 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 ARHGDIBP52566 201 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 LRRC37A5PQ49AS3 106 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 SCGB2B2Q4G0G5 96 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 GLYATL3Q5SZD4 288 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 OR2W3Q7Z3T1 314 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 ZNF563Q8TA94 476 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 RNF128Q8TEB7 428 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 ZNF75AQ96N20 296 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 ELF4Q99607 663 aaPredicted RBP15.83■□□□□ 0.12
SYNE3-202ENST00000553340 KXD1Q9BQD3 176 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 EDEM2Q9BV94 578 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 HPF1Q9NWY4 346 aa15.83■□□□□ 0.12
SYNE3-202ENST00000553340 ZNF107Q9UII5 783 aaPredicted RBP15.83■□□□□ 0.12
SYNE3-202ENST00000553340 FARSAQ9Y285 508 aaKnown RBP15.83■□□□□ 0.12
SYNE3-202ENST00000553340 TMEM200CA6NKL6 621 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 SCDO00767 359 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 SMAD9O15198 467 aaKnown RBP15.82■□□□□ 0.12
SYNE3-202ENST00000553340 ALOX12BO75342 701 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 ZNF735P0CB33 412 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 ST6GAL1P15907 406 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 CENPAP49450 140 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 SKP1P63208 163 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 PAN3Q58A45 887 aaKnown RBP15.82■□□□□ 0.12
SYNE3-202ENST00000553340 TEX30Q5JUR7 227 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 ACOT7LQ6ZUV0 252 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 NDUFAF7Q7L592 441 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 ARHGEF39Q8N4T4 335 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 TAAR8Q969N4 342 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 ZBTB8AQ96BR9 441 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 ZNF587Q96SQ5 575 aaPredicted RBP15.82■□□□□ 0.12
SYNE3-202ENST00000553340 PRODH2Q9UF12 536 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 MSRAQ9UJ68 235 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 PURGQ9UJV8 347 aaKnown RBP15.82■□□□□ 0.12
SYNE3-202ENST00000553340 ZNF175Q9Y473 711 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 PRKNO60260 465 aaPredicted RBP15.82■□□□□ 0.12
SYNE3-202ENST00000553340 PNPP00491 289 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 CD74P04233 296 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 MAOAP21397 527 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 TACR3P29371 465 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 DLSTP36957 453 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 SNTB1Q13884 538 aaKnown RBP15.82■□□□□ 0.12
SYNE3-202ENST00000553340 HYAL4Q2M3T9 481 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 OTPQ5XKR4 325 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 SLC18B1Q6NT16 456 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 NUP54Q7Z3B4 507 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 ZNF615Q8N8J6 731 aa15.82■□□□□ 0.12
SYNE3-202ENST00000553340 BLACEA4D250 179 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 HNRNPA2B1P22626 353 aaKnown RBP15.81■□□□□ 0.12
SYNE3-202ENST00000553340 VWA2Q5GFL6 755 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 BEX5Q5H9J7 111 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 UQCC3Q6UW78 93 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 ZNF761Q86XN6 746 aaPredicted RBP15.81■□□□□ 0.12
SYNE3-202ENST00000553340 SFTPA2Q8IWL1 248 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 ASB5Q8WWX0 329 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 PPP1R14AQ96A00 147 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 SEC22AQ96IW7 307 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 GABRG3Q99928 467 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 PTDSS2Q9BVG9 487 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 TAS2R4Q9NYW5 299 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 CLDN16Q9Y5I7 305 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 A0A0A6YYH2 397 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 A0A1W2PPC1 479 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 RNF222A6NCQ9 220 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 OR14I1A6ND48 311 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 A6NJ64 397 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 SIGLEC6O43699 453 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 OR6A2O95222 327 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 HOXB2P14652 356 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 COL9A1P20849 921 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 PPIAP62937 165 aaKnown RBP15.81■□□□□ 0.12
SYNE3-202ENST00000553340 UBE2IP63279 158 aaKnown RBP15.81■□□□□ 0.12
SYNE3-202ENST00000553340 CCDC157Q569K6 752 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 ADGRE4PQ86SQ3 457 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 OR13C8Q8NGS7 320 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 PPP1R1CQ8WVI7 109 aa15.81■□□□□ 0.12
SYNE3-202ENST00000553340 SEMA6CQ9H3T2 930 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms