RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 UBOX5O94941 541 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 MSR1P21757 451 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 PCSK6P29122 969 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 RASSF2P50749 326 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 KRR1Q13601 381 aaKnown RBP13.24□□□□□ -0.29
SHMT2-204ENST00000553324 MESTQ5EB52 335 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 RPL13AP3Q6NVV1 102 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 CLEC9AQ6UXN8 241 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 THSD4Q6ZMP0 1018 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 CIARTQ8N365 385 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-204ENST00000553324 CLDN22Q8N7P3 220 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 MRPL24Q96A35 216 aaKnown RBP13.24□□□□□ -0.29
SHMT2-204ENST00000553324 GPA33Q99795 319 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 VRK1Q99986 396 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-204ENST00000553324 BTBD10Q9BSF8 475 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 REG4Q9BYZ8 158 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 BCL2L14Q9BZR8 327 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 MYOZ1Q9NP98 299 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-204ENST00000553324 VSX1Q9NZR4 365 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-204ENST00000553324 EIF3KQ9UBQ5 218 aaKnown RBP13.24□□□□□ -0.29
SHMT2-204ENST00000553324 LYVE1Q9Y5Y7 322 aa13.24□□□□□ -0.29
SHMT2-204ENST00000553324 A0A1W2PPL8 197 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 AQP12BA6NM10 295 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 KHDRBS3O75525 346 aaKnown RBP13.23□□□□□ -0.29
SHMT2-204ENST00000553324 RAP2AP10114 183 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 ZNF32P17041 273 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 STOMP27105 288 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 LAP3P28838 519 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 NOS3P29474 1203 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 CRABP1P29762 137 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 GSSP48637 474 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 UCP2P55851 309 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 MOGQ16653 247 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 PABPC1L2AQ5JQF8 200 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 OR2T5Q6IEZ7 315 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 DNM1P34Q6PK57 102 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 AQP12AQ8IXF9 295 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 OR10H5Q8NGA6 315 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 OR2T29Q8NH02 315 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 FANK1Q8TC84 345 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 NEU4Q8WWR8 484 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-204ENST00000553324 HTRA1Q92743 480 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 CCDC124Q96CT7 223 aaKnown RBP13.23□□□□□ -0.29
SHMT2-204ENST00000553324 ERMAPQ96PL5 475 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-204ENST00000553324 OR52D1Q9H346 318 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 MS4A5Q9H3V2 200 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 GSX1Q9H4S2 264 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-204ENST00000553324 REEP1Q9H902 201 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 POLE4Q9NR33 117 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 IL20RAQ9UHF4 553 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 GPR160Q9UJ42 338 aa13.23□□□□□ -0.29
SHMT2-204ENST00000553324 ACANP16112 2415 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 FLNAP21333 2647 aaKnown RBP13.22□□□□□ -0.29
SHMT2-204ENST00000553324 TMEM129A0AVI4 362 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 ACOT8O14734 319 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 SYNGR3O43761 229 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 SLC16A7O60669 478 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 ATP5HO75947 161 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 CCNB2O95067 398 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 HEXAP06865 529 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 GDI2P50395 445 aaKnown RBP13.22□□□□□ -0.29
SHMT2-204ENST00000553324 FXYD6P3P58550 94 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 LSM6P62312 80 aaKnown RBP13.22□□□□□ -0.29
SHMT2-204ENST00000553324 PSG4Q00888 419 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 RGS7BPQ6MZT1 257 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-204ENST00000553324 PGBD2Q6P3X8 592 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 PGM2L1Q6PCE3 622 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 ARL9Q6T311 187 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 JAZF1Q86VZ6 243 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 GLB1L2Q8IW92 636 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 SVOPLQ8N434 492 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 ZNF540Q8NDQ6 660 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 CPEB3Q8NE35 698 aaKnown RBP13.22□□□□□ -0.29
SHMT2-204ENST00000553324 C11orf40Q8WZ69 217 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 FAM168AQ92567 244 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 RASD2Q96D21 266 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 CLPTM1LQ96KA5 538 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 SNX18Q96RF0 628 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 IFT27Q9BW83 186 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 SYT4Q9H2B2 425 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 DYNLRB1Q9NP97 96 aa13.22□□□□□ -0.29
SHMT2-204ENST00000553324 RNF223E7ERA6 249 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 H7C1C5 153 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 NDUFS8O00217 210 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 SOCS2O14508 198 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 DNAJC8O75937 253 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-204ENST00000553324 RENP00797 406 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 SLC25A16P16260 332 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 GSTM3P21266 225 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 CCNOP22674 350 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 APEX1P27695 318 aaKnown RBP13.21□□□□□ -0.29
SHMT2-204ENST00000553324 CDKN2AP42771 156 aaKnown RBP13.21□□□□□ -0.29
SHMT2-204ENST00000553324 PDLIM4P50479 330 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 LCN6P62502 163 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 SCRN3Q0VDG4 424 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 MICAQ29983 383 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 OR52L1Q8NGH7 329 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 OR4C15Q8NGM1 316 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 POM121L2Q96KW2 1035 aa13.21□□□□□ -0.29
SHMT2-204ENST00000553324 SAMD8Q96LT4 415 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms