RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 PPP1R3CQ9UQK1 317 aa10.76□□□□□ -0.69
VPS29-211ENST00000553128 POMT1Q9Y6A1 747 aa10.76□□□□□ -0.69
VPS29-211ENST00000553128 TENM3Q9P273 2699 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 TIMM8AO60220 97 aaPredicted RBP10.75□□□□□ -0.69
VPS29-211ENST00000553128 ENTPD5O75356 428 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 LIPAP38571 399 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 MMP16P51512 607 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 CDH12P55289 794 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 PCBP3P57721 371 aaKnown RBP10.75□□□□□ -0.69
VPS29-211ENST00000553128 LOXL3P58215 753 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 GNB2P62879 340 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 OR1Q1Q15612 314 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 HIST3H3Q16695 136 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 PDCD4Q53EL6 469 aaKnown RBP10.75□□□□□ -0.69
VPS29-211ENST00000553128 RUNDC3AQ59EK9 446 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 GPR157Q5UAW9 335 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 FAM91A1Q658Y4 838 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 C11orf87Q6NUJ2 197 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 IFT20Q8IY31 132 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 ZNF420Q8TAQ5 688 aaPredicted RBP10.75□□□□□ -0.69
VPS29-211ENST00000553128 SSMEM1Q8WWF3 244 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 NABP1Q96AH0 204 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 THOC1Q96FV9 657 aaKnown RBP10.75□□□□□ -0.69
VPS29-211ENST00000553128 FAM71F1Q96KD3 344 aaPredicted RBP10.75□□□□□ -0.69
VPS29-211ENST00000553128 CACYBPQ9HB71 228 aaKnown RBP10.75□□□□□ -0.69
VPS29-211ENST00000553128 AIG1Q9NVV5 245 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 EIF3KQ9UBQ5 218 aaKnown RBP10.75□□□□□ -0.69
VPS29-211ENST00000553128 RYR2Q92736 4967 aa10.75□□□□□ -0.69
VPS29-211ENST00000553128 BIRC6Q9NR09 4857 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 IGKV1D-43A0A0B4J1Z2 117 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 C22orf46C9J442 243 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 TNFRSF13BO14836 293 aaPredicted RBP10.74□□□□□ -0.69
VPS29-211ENST00000553128 PLXNB1O43157 2135 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 RNF13O43567 381 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 PIP5K1CO60331 668 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 SLC2A10O95528 541 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 CYB5R3P00387 301 aaPredicted RBP10.74□□□□□ -0.69
VPS29-211ENST00000553128 OPN1MWP04001 364 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 OPN1MW2P0DN77 364 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 OPN1MW3P0DN78 364 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 TNFRSF1AP19438 455 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 PRKAR1BP31321 381 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 GDI2P50395 445 aaKnown RBP10.74□□□□□ -0.69
VPS29-211ENST00000553128 ERFP50548 548 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 RPL15P61313 204 aaKnown RBP10.74□□□□□ -0.69
VPS29-211ENST00000553128 ERVK-25P63136 954 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 PSG4Q00888 419 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 NRN1LQ496H8 165 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 FAM201AQ5SY85 155 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 CEP85LQ5SZL2 805 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 SLC27A4Q6P1M0 643 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 REC114Q7Z4M0 266 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 MUC20Q8N307 709 aaPredicted RBP10.74□□□□□ -0.69
VPS29-211ENST00000553128 ZSCAN4Q8NAM6 433 aaPredicted RBP10.74□□□□□ -0.69
VPS29-211ENST00000553128 OR2V2Q96R30 315 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 SORT1Q99523 831 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 TMEM246Q9BRR3 403 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 PCGF1Q9BSM1 259 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 TMEM43Q9BTV4 400 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 SLC19A3Q9BZV2 496 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 WNT5BQ9H1J7 359 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 GCM1Q9NP62 436 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 CGGBP1Q9UFW8 167 aaPredicted RBP10.74□□□□□ -0.69
VPS29-211ENST00000553128 UGT2A1Q9Y4X1 527 aa10.74□□□□□ -0.69
VPS29-211ENST00000553128 IGHV3-64DA0A0J9YX35 117 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 CENPVL3A0A0U1RRI6 287 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 TLDC2A0PJX2 215 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 WDR91A4D1P6 747 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 OR6A2O95222 327 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 CH25HO95992 272 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 MT-ATP6P00846 226 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 ETV4P43268 484 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 CLRN1P58418 232 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 OXLD1Q5BKU9 147 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 ZMAT1Q5H9K5 638 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 OGFOD2Q6N063 350 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 LYPD2Q6UXB3 125 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 C10orf111Q8N326 155 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 BBS10Q8TAM1 723 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 C10orf82Q8WW14 230 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 NEIL1Q96FI4 390 aaPredicted RBP10.73□□□□□ -0.69
VPS29-211ENST00000553128 TBX15Q96SF7 602 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 RHOXF2Q9BQY4 288 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 MRPL13Q9BYD1 178 aaKnown RBP10.73□□□□□ -0.69
VPS29-211ENST00000553128 CCNB1IP1Q9NPC3 277 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 A4GALTQ9NPC4 353 aa10.73□□□□□ -0.69
VPS29-211ENST00000553128 AURKAIP1Q9NWT8 199 aaPredicted RBP10.73□□□□□ -0.69
VPS29-211ENST00000553128 DYNC2H1Q8NCM8 4307 aaKnown RBP10.72□□□□□ -0.69
VPS29-211ENST00000553128 TET2Q6N021 2002 aaPredicted RBP10.72□□□□□ -0.69
VPS29-211ENST00000553128 DOCK11Q5JSL3 2073 aa10.72□□□□□ -0.69
VPS29-211ENST00000553128 A0A0U1RQK1 487 aa10.72□□□□□ -0.69
VPS29-211ENST00000553128 TMEM247A6NEH6 219 aa10.72□□□□□ -0.69
VPS29-211ENST00000553128 ICMTO60725 284 aa10.72□□□□□ -0.69
VPS29-211ENST00000553128 IGHG1P01857 330 aa10.72□□□□□ -0.69
VPS29-211ENST00000553128 ZCCHC18P0CG32 403 aa10.72□□□□□ -0.69
VPS29-211ENST00000553128 MMP9P14780 707 aa10.72□□□□□ -0.69
VPS29-211ENST00000553128 CFHR2P36980 270 aa10.72□□□□□ -0.69
VPS29-211ENST00000553128 IER3P46695 156 aa10.72□□□□□ -0.69
VPS29-211ENST00000553128 PITPNBP48739 271 aa10.72□□□□□ -0.69
VPS29-211ENST00000553128 ZNF84P51523 738 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms