RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SIGLEC11Q96RL6 698 aa13.61□□□□□ -0.23
CUX1-214ENST00000550008 CCDC86Q9H6F5 360 aaKnown RBP13.61□□□□□ -0.23
CUX1-214ENST00000550008 SLC22A11Q9NSA0 550 aa13.61□□□□□ -0.23
CUX1-214ENST00000550008 KLK11Q9UBX7 282 aa13.61□□□□□ -0.23
CUX1-214ENST00000550008 ATPIF1Q9UII2 106 aa13.61□□□□□ -0.23
CUX1-214ENST00000550008 SLC5A6Q9Y289 635 aa13.61□□□□□ -0.23
CUX1-214ENST00000550008 PCDHGA1Q9Y5H4 931 aa13.61□□□□□ -0.23
CUX1-214ENST00000550008 NAP1L6A6NFF2 107 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 FRG2CA6NGY1 282 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 HSPB6O14558 160 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 FCGR2AP12318 317 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 KIR2DL3P43628 341 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 PTP4A1Q93096 173 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 ATF6BQ99941 703 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 HIF3AQ9Y2N7 669 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 POLEQ07864 2286 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 ATF1P18846 271 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 CRYBA2P53672 197 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 NXPH1P58417 271 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 MALLQ13021 153 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 GAB4Q2WGN9 574 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 MRPL21Q7Z2W9 205 aaKnown RBP13.6□□□□□ -0.23
CUX1-214ENST00000550008 ANGPTL5Q86XS5 388 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 OR1N1Q8NGS0 311 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 OR51E1Q8TCB6 317 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 DCBLD2Q96PD2 775 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 DOCK4Q8N1I0 1966 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 VWA8A3KMH1 1905 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 A0A0A6YYH2 397 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 TMEM235A6NFC5 223 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 A6NJ64 397 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 MRPL33O75394 65 aaKnown RBP13.6□□□□□ -0.23
CUX1-214ENST00000550008 ZFPL1O95159 310 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 DDAH2O95865 285 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 QDPRP09417 244 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 PNLIPRP2P54317 469 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 MTCP1P56278 107 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 C3orf33Q6P1S2 294 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 CNEP1R1Q8N9A8 125 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 OR10K1Q8NGX5 313 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 SORCS2Q96PQ0 1159 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 MRI1Q9BV20 369 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 OR10A2Q9H208 303 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 CHST11Q9NPF2 352 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 IFITM5A6NNB3 132 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 HOXC4P09017 264 aaPredicted RBP13.6□□□□□ -0.23
CUX1-214ENST00000550008 HOXB5P09067 269 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 POU3F3P20264 500 aaPredicted RBP13.6□□□□□ -0.23
CUX1-214ENST00000550008 TGM1P22735 817 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 CDAP32320 146 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 ZNF93P35789 620 aaPredicted RBP13.6□□□□□ -0.23
CUX1-214ENST00000550008 UBE2IP63279 158 aaKnown RBP13.6□□□□□ -0.23
CUX1-214ENST00000550008 MRPS10P82664 201 aaKnown RBP13.6□□□□□ -0.23
CUX1-214ENST00000550008 SORDQ00796 357 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 MFAP5Q13361 173 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 ASAH1Q13510 395 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 GPR155Q7Z3F1 870 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 OR51S1Q8NGJ8 323 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 TRMT61AQ96FX7 289 aaKnown RBP13.6□□□□□ -0.23
CUX1-214ENST00000550008 OR2M2Q96R28 347 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 PLSCR3Q9NRY6 295 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 KCNS2Q9ULS6 477 aa13.6□□□□□ -0.23
CUX1-214ENST00000550008 SLC43A1O75387 559 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 HRGP04196 525 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 DLX5P56178 289 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 SLC35A1P78382 337 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 SSX6Q7RTT6 188 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 C12orf45Q8N5I9 185 aaPredicted RBP13.59□□□□□ -0.23
CUX1-214ENST00000550008 OR10G3Q8NGC4 313 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 VSTM2LQ96N03 204 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 CDC6Q99741 560 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 TMEM59Q9BXS4 323 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 STEAP1Q9UHE8 339 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 IGHV3-64DA0A0J9YX35 117 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 FOXS1O43638 330 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 OR7C1O76099 320 aaPredicted RBP13.59□□□□□ -0.23
CUX1-214ENST00000550008 GLI4P10075 376 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 EPXP11678 715 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 CARD18P57730 90 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 UBE2NP61088 152 aaKnown RBP13.59□□□□□ -0.23
CUX1-214ENST00000550008 SEC61A1P61619 476 aaKnown RBP13.59□□□□□ -0.23
CUX1-214ENST00000550008 IFITM3Q01628 133 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 SELENBP1Q13228 472 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 COMTD1Q86VU5 262 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 BHLHE23Q8NDY6 225 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 GNRHR2Q96P88 292 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 ABHD6Q9BV23 337 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 B9D1Q9UPM9 204 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 MRPS28Q9Y2Q9 187 aaKnown RBP13.59□□□□□ -0.23
CUX1-214ENST00000550008 HRH3Q9Y5N1 445 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 TAS2R19P59542 299 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 ETFDHQ16134 617 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 TMEM201Q5SNT2 666 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 ARTNQ5T4W7 220 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 HEPHL1Q6MZM0 1159 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 STEAP1BQ6NZ63 245 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 FAM198BQ6UWH4 519 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 GSG1LQ6UXU4 331 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 SYS1Q8N2H4 156 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 LILRB4Q8NHJ6 448 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms