RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 PDZD9Q8IXQ8 264 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 SPAG16Q8N0X2 631 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 SLC43A2Q8N370 569 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 C17orf47Q8NEP4 570 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 SNIP1Q8TAD8 396 aaKnown RBP14.79□□□□□ -0.04
CUX1-213ENST00000549414 PRRT1Q99946 306 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 VN1R1Q9GZP7 353 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 ENKD1Q9H0I2 346 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 MRPS28Q9Y2Q9 187 aaKnown RBP14.79□□□□□ -0.04
CUX1-213ENST00000549414 LSM5Q9Y4Y9 91 aaKnown RBP14.79□□□□□ -0.04
CUX1-213ENST00000549414 A0A1B0GTH9 108 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 S100A9P06702 114 aaKnown RBP14.79□□□□□ -0.04
CUX1-213ENST00000549414 ZNF93P35789 620 aaPredicted RBP14.79□□□□□ -0.04
CUX1-213ENST00000549414 MTCP1P56278 107 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 FAM76BQ5HYJ3 339 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 HACD4Q5VWC8 232 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 STEAP1BQ6NZ63 245 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 SYS1Q8N2H4 156 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 OR5H6Q8NGV6 325 aa14.79□□□□□ -0.04
CUX1-213ENST00000549414 FOXRED1Q96CU9 486 aaPredicted RBP14.79□□□□□ -0.04
CUX1-213ENST00000549414 MCTS1Q9ULC4 181 aaKnown RBP14.79□□□□□ -0.04
CUX1-213ENST00000549414 MRPL33O75394 65 aaKnown RBP14.78□□□□□ -0.04
CUX1-213ENST00000549414 TP53P04637 393 aaPredicted RBP14.78□□□□□ -0.04
CUX1-213ENST00000549414 PTGS2P35354 604 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 FASLGP48023 281 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 FOXL2P58012 376 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 MFAP5Q13361 173 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 GUSBP11Q6P575 273 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 ATF6BQ99941 703 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 BANF2Q9H503 90 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 SLCO1C1Q9NYB5 712 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 PCDHGA1Q9Y5H4 931 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 WDR81Q562E7 1941 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 OR6C68A6NDL8 312 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 DIRAS3O95661 229 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 ABCD3P28288 659 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 CCR9P51686 369 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 SEC61A1P61619 476 aaKnown RBP14.78□□□□□ -0.04
CUX1-213ENST00000549414 FGL1Q08830 312 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 AADACL4Q5VUY2 407 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 ALKAL2Q6UX46 152 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 CPEB2Q7Z5Q1 589 aaKnown RBP14.78□□□□□ -0.04
CUX1-213ENST00000549414 ZNF681Q96N22 645 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 C20orf85Q9H1P6 137 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 EHFQ9NZC4 300 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 MLXQ9UH92 298 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 FLVCR2Q9UPI3 526 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 IGHV1OR21-1A0A087WYE8 117 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 PRSS37A4D1T9 235 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 M0R036 132 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 PET100P0DJ07 73 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 DLSTP36957 453 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 PLEKHN1Q494U1 663 aaPredicted RBP14.78□□□□□ -0.04
CUX1-213ENST00000549414 TMEM81Q6P7N7 255 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 ABI3BPQ7Z7G0 1075 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 OR51S1Q8NGJ8 323 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 CHST11Q9NPF2 352 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 NXT1Q9UKK6 140 aaKnown RBP14.78□□□□□ -0.04
CUX1-213ENST00000549414 IFITM5A6NNB3 132 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 CNOT4O95628 575 aaKnown RBP14.78□□□□□ -0.04
CUX1-213ENST00000549414 UBE2MP61081 183 aaKnown RBP14.78□□□□□ -0.04
CUX1-213ENST00000549414 CCL7P80098 99 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 PSG6Q00889 435 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 ZNF74Q16587 644 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 PLCXD3Q63HM9 321 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 LAIR1Q6GTX8 287 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 HEPHL1Q6MZM0 1159 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 C3orf33Q6P1S2 294 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 MEX3BQ6ZN04 569 aaKnown RBP14.78□□□□□ -0.04
CUX1-213ENST00000549414 ANGPTL5Q86XS5 388 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 STEAP2Q8NFT2 490 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 PELI1Q96FA3 418 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 EDEM2Q9BV94 578 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 SLC19A3Q9BZV2 496 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 ERVMER34-1Q9H9K5 563 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 LHX9Q9NQ69 397 aa14.78□□□□□ -0.04
CUX1-213ENST00000549414 FRG2CA6NGY1 282 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 ZNF705EA8MWA4 302 aaPredicted RBP14.77□□□□□ -0.04
CUX1-213ENST00000549414 OR7C1O76099 320 aaPredicted RBP14.77□□□□□ -0.04
CUX1-213ENST00000549414 DDAH2O95865 285 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 GAAP10253 952 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 ABOP16442 354 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 ZNF117Q03924 483 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 MOB3CQ70IA8 216 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 OR2G2Q8NGZ5 317 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 PHYHIPQ92561 330 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 RAB3CQ96E17 227 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 CCDC74BQ96LY2 380 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 NECAB3Q96P71 396 aaPredicted RBP14.77□□□□□ -0.04
CUX1-213ENST00000549414 MOGAT1Q96PD6 335 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 SNX18Q96RF0 628 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 SIGLEC11Q96RL6 698 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 IGHV3-15A0A0B4J1V0 119 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 TGM1P22735 817 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 BLVRBP30043 206 aaPredicted RBP14.77□□□□□ -0.04
CUX1-213ENST00000549414 APOBEC1P41238 236 aaKnown RBP14.77□□□□□ -0.04
CUX1-213ENST00000549414 KIR2DL3P43628 341 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 PNLIPRP2P54317 469 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 FOXF1Q12946 379 aa14.77□□□□□ -0.04
CUX1-213ENST00000549414 OVCH1Q7RTY7 1134 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms