RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 FAM173AQ9BQD7 235 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 B3GALT5Q9Y2C3 310 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 C7orf72A4D263 438 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 OR6C68A6NDL8 312 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 GLCEO94923 617 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 TCN2P20062 427 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 DTYMKP23919 212 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 RPL13AP40429 203 aaKnown RBP9.79□□□□□ -0.84
CLIP1-209ENST00000537178 RGRP47804 291 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 NPY4RP50391 375 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 ETV1P50549 477 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 FAM162BQ5T6X4 162 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 MRPL43Q8N983 215 aaKnown RBP9.79□□□□□ -0.84
CLIP1-209ENST00000537178 SCCPDHQ8NBX0 429 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 OR2AE1Q8NHA4 323 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 MBOAT4Q96T53 435 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 C20orf85Q9H1P6 137 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 RIMS4Q9H426 269 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-209ENST00000537178 A4GALTQ9NPC4 353 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 LHX3Q9UBR4 397 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 USP3Q9Y6I4 520 aa9.79□□□□□ -0.84
CLIP1-209ENST00000537178 PTPRFP10586 1907 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 XRCC3O43542 346 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 CTNSO60931 367 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 PDGFBP01127 241 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 PMP2P02689 132 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 EDN3P14138 238 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 FCER1GP30273 86 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 RPS23P62266 143 aaKnown RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 REEP5Q00765 189 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 TAF9Q16594 264 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 TBC1D28Q2M2D7 210 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 TBPL2Q6SJ96 375 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 ANGPTL5Q86XS5 388 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 GSX2Q9BZM3 304 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 PRAMEF25A6NGN4 478 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 DEGS1O15121 323 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 ATXN1LP0C7T5 689 aaKnown RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 ADRA2CP18825 462 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 ELAVL4P26378 380 aaKnown RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 HLA-FP30511 346 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 EDDM3AQ14507 147 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 IHHQ14623 411 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 PRAMEF5Q5TYX0 476 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 PRAMEF6Q5VXH4 476 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 KCNRGQ8N5I3 272 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 OR5B3Q8NH48 314 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 GNPNAT1Q96EK6 184 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 LYSMD1Q96S90 227 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 SCPEP1Q9HB40 452 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 PADI1Q9ULC6 663 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 OR6C76A6NM76 312 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 RPA2P15927 270 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 CTRB1P17538 263 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 PAX6P26367 422 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 KIAA1024LP59773 190 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 HTRA4P83105 476 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 PMPCAQ10713 525 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 CTRB2Q6GPI1 263 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 BPIFCQ8NFQ6 507 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 OR10J5Q8NHC4 309 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 PHOSPHO2Q8TCD6 241 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 PCNPQ8WW12 178 aaKnown RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 EMG1Q92979 244 aaKnown RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 TIMD4Q96H15 378 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 UBQLN3Q9H347 655 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 CDCP1Q9H5V8 836 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 TAF9BQ9HBM6 251 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 TAAR5O14804 337 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 YKT6O15498 198 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 TGOLN2O43493 480 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 GLAP06280 429 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 CSF3P09919 207 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 SRMP19623 302 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 ACHEP22303 614 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 GJA4P35212 333 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 TAS2R45P59539 299 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 ENDOGQ14249 297 aaKnown RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 LRRC26Q2I0M4 334 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 ZNF468Q5VIY5 522 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 LINC00299Q6ZSB3 139 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 GDF7Q7Z4P5 450 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 CPEB2Q7Z5Q1 589 aaKnown RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 THNSL2Q86YJ6 484 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 DVL3Q92997 716 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-209ENST00000537178 TMEM38AQ9H6F2 299 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 ATP13A2Q9NQ11 1180 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 FBXL4Q9UKA2 621 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 HS3ST2Q9Y278 367 aa9.78□□□□□ -0.84
CLIP1-209ENST00000537178 ZNF724A8MTY0 619 aa9.77□□□□□ -0.84
CLIP1-209ENST00000537178 TXNDC12O95881 172 aa9.77□□□□□ -0.84
CLIP1-209ENST00000537178 TRAPPC2P0DI81 140 aa9.77□□□□□ -0.84
CLIP1-209ENST00000537178 TRAPPC2BP0DI82 140 aa9.77□□□□□ -0.84
CLIP1-209ENST00000537178 ZNF239Q16600 458 aaKnown RBP9.77□□□□□ -0.84
CLIP1-209ENST00000537178 TIGITQ495A1 244 aa9.77□□□□□ -0.84
CLIP1-209ENST00000537178 SYT6Q5T7P8 510 aaPredicted RBP9.77□□□□□ -0.84
CLIP1-209ENST00000537178 KDM4DQ6B0I6 523 aa9.77□□□□□ -0.84
CLIP1-209ENST00000537178 BTNL8Q6UX41 500 aa9.77□□□□□ -0.84
CLIP1-209ENST00000537178 H1FNTQ75WM6 255 aaPredicted RBP9.77□□□□□ -0.84
CLIP1-209ENST00000537178 ZNF534Q76KX8 674 aa9.77□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms