RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PTDSS2Q9BVG9 487 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 C8orf33Q9H7E9 229 aaPredicted RBP17.36■□□□□ 0.37
VPS28-213ENST00000530983 MRPL22Q9NWU5 206 aaKnown RBP17.36■□□□□ 0.37
VPS28-213ENST00000530983 RP1P56715 2156 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 SPEGQ15772 3267 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 TMEM272A0A1B0GTI8 110 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 PRSS37A4D1T9 235 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 NUPL2O15504 423 aaKnown RBP17.35■□□□□ 0.37
VPS28-213ENST00000530983 NMBP08949 121 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 PRSS3P35030 304 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 INSM1Q01101 510 aaPredicted RBP17.35■□□□□ 0.37
VPS28-213ENST00000530983 RAB30Q15771 203 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 OVCH2Q7RTZ1 564 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 ZNF519Q8TB69 540 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 THRSPQ92748 146 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 DVL3Q92997 716 aaPredicted RBP17.35■□□□□ 0.37
VPS28-213ENST00000530983 SLC25A36Q96CQ1 311 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 MRTO4Q9UKD2 239 aaKnown RBP17.35■□□□□ 0.37
VPS28-213ENST00000530983 GTF2A1LQ9UNN4 478 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 SEC16AO15027 2179 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 A0A1W2PPC4 97 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 H3BUI4 141 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 LGALS8O00214 317 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 GOSR2O14653 212 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 GLULP15104 373 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 OR1D4P47884 311 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 MFGE8Q08431 387 aaPredicted RBP17.35■□□□□ 0.37
VPS28-213ENST00000530983 TMUB2Q71RG4 321 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 OR8S1Q8NH09 359 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.35■□□□□ 0.37
VPS28-213ENST00000530983 ASB17Q8WXJ9 295 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 SLC38A3Q99624 504 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 PDE7BQ9NP56 450 aa17.35■□□□□ 0.37
VPS28-213ENST00000530983 COL5A1P20908 1838 aaPredicted RBP17.34■□□□□ 0.37
VPS28-213ENST00000530983 IGKV3D-11A0A0A0MRZ8 115 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.34■□□□□ 0.37
VPS28-213ENST00000530983 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.34■□□□□ 0.37
VPS28-213ENST00000530983 SHISA7A6NL88 538 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 POM121CA8CG34 1229 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 TMEM150CB9EJG8 249 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 F5H5P2 479 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 SLC16A7O60669 478 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 WNT11O96014 354 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 SPARCP09486 303 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 LAMA1P25391 3075 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 CENPAP49450 140 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 PPM1FP49593 454 aaPredicted RBP17.34■□□□□ 0.37
VPS28-213ENST00000530983 EFNA3P52797 238 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 RPL27P61353 136 aaKnown RBP17.34■□□□□ 0.37
VPS28-213ENST00000530983 ETFDHQ16134 617 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 SGCBQ16585 318 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 ALKAL2Q6UX46 152 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 MAMDC2Q7Z304 686 aaPredicted RBP17.34■□□□□ 0.37
VPS28-213ENST00000530983 OR1J4Q8NGS1 313 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 C8orf44Q96CB5 159 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 CHST6Q9GZX3 395 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 APMAPQ9HDC9 416 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 SLC17A5Q9NRA2 495 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 SESN1Q9Y6P5 492 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 FREM3P0C091 2139 aa17.34■□□□□ 0.37
VPS28-213ENST00000530983 FXYD6-FXYD2A0A087WZ82 144 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 IGLV1-36A0A0B4J1U3 117 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 TTLL8A6PVC2 850 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 A8MXK9 166 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 B3GALNT1O75752 331 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 NUDT14O95848 222 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 LPLP06858 475 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 ROM1Q03395 351 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 ARHGAP40Q5TG30 622 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 TMEM225Q6GV28 225 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 SLC18B1Q6NT16 456 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 TTLL10Q6ZVT0 673 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 STPG2Q8N412 459 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 GPX8Q8TED1 209 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 SLC25A28Q96A46 364 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 NUDT9Q9BW91 350 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 FXYD6Q9H0Q3 95 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 ATG5Q9H1Y0 275 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 EPHA6Q9UF33 1036 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 MMACHCQ9Y4U1 282 aa17.33■□□□□ 0.37
VPS28-213ENST00000530983 RP2O75695 350 aa17.33■□□□□ 0.36
VPS28-213ENST00000530983 CTLA4P16410 223 aa17.33■□□□□ 0.36
VPS28-213ENST00000530983 IL12BP29460 328 aa17.33■□□□□ 0.36
VPS28-213ENST00000530983 EBPQ15125 230 aaKnown RBP17.33■□□□□ 0.36
VPS28-213ENST00000530983 B3GNTL1Q67FW5 361 aaPredicted RBP17.33■□□□□ 0.36
VPS28-213ENST00000530983 STEAP1BQ6NZ63 245 aa17.33■□□□□ 0.36
VPS28-213ENST00000530983 Q6ZS52 159 aa17.33■□□□□ 0.36
VPS28-213ENST00000530983 NDUFAF7Q7L592 441 aa17.33■□□□□ 0.36
VPS28-213ENST00000530983 C9orf40Q8IXQ3 194 aa17.33■□□□□ 0.36
VPS28-213ENST00000530983 ASB5Q8WWX0 329 aa17.33■□□□□ 0.36
VPS28-213ENST00000530983 FBXO9Q9UK97 447 aaPredicted RBP17.33■□□□□ 0.36
VPS28-213ENST00000530983 CEP290O15078 2479 aa17.33■□□□□ 0.36
VPS28-213ENST00000530983 BRWD1Q9NSI6 2320 aa17.33■□□□□ 0.36
VPS28-213ENST00000530983 TLCD2A6NGC4 264 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 LILRA5A6NI73 299 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 KRBOX1C9JBD0 128 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 NDUFA2O43678 99 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 ZP2Q05996 745 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 KIF26BQ2KJY2 2108 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 MDGA2Q7Z553 956 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms