RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 IGHG1P01857 330 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 STSP08842 583 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 CCDC159P0C7I6 412 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 PGA4P0DJD7 388 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 PGA3P0DJD8 388 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 GLI4P10075 376 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 ERVFRD-1P60508 538 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 IL5RAQ01344 420 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 CD47Q08722 323 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 CAMK2DQ13557 499 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 KRR1Q13601 381 aaKnown RBP6.53□□□□□ -1.36
CD44-228ENST00000528455 CRMP1Q14194 572 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 GUSBP1Q15486 140 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 HSPB2Q16082 182 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 MESTQ5EB52 335 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 RBM48Q5RL73 367 aaKnown RBP6.53□□□□□ -1.36
CD44-228ENST00000528455 KRT80Q6KB66 452 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 LEG1Q6P5S2 330 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 DNM1P34Q6PK57 102 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 SLC25A47Q6Q0C1 308 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 RPTNQ6XPR3 784 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 MEPCEQ7L2J0 689 aaKnown RBP6.53□□□□□ -1.36
CD44-228ENST00000528455 CXXC5Q7LFL8 322 aaKnown RBP6.53□□□□□ -1.36
CD44-228ENST00000528455 EGFL6Q8IUX8 553 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 GID4Q8IVV7 300 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 C20orf196Q8IYI0 205 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 TMEM123Q8N131 208 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 OR6V1Q8N148 313 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 IQCF1Q8N6M8 205 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 POMGNT2Q8NAT1 580 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 OR2T4Q8NH00 348 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 HDAC2Q92769 488 aaKnown RBP6.53□□□□□ -1.36
CD44-228ENST00000528455 RASD2Q96D21 266 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 NMD3Q96D46 503 aaKnown RBP6.53□□□□□ -1.36
CD44-228ENST00000528455 CNBD2Q96M20 576 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 OR2M2Q96R28 347 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 NR1H4Q96RI1 486 aaPredicted RBP6.53□□□□□ -1.36
CD44-228ENST00000528455 IL4I1Q96RQ9 567 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 RASSF1Q9NS23 344 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 MED29Q9NX70 200 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 UBAP1Q9NZ09 502 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 GLTPQ9NZD2 209 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 ZNF629Q9UEG4 869 aaPredicted RBP6.53□□□□□ -1.36
CD44-228ENST00000528455 WARS2Q9UGM6 360 aaKnown RBP6.53□□□□□ -1.36
CD44-228ENST00000528455 FBXL7Q9UJT9 491 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 RPL36Q9Y3U8 105 aaKnown RBP6.53□□□□□ -1.36
CD44-228ENST00000528455 POLEQ07864 2286 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 ICE1Q9Y2F5 2266 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 CENPEQ02224 2701 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 KHDRBS3O75525 346 aaKnown RBP6.52□□□□□ -1.37
CD44-228ENST00000528455 WBP4O75554 376 aaKnown RBP6.52□□□□□ -1.37
CD44-228ENST00000528455 SERPINI2O75830 405 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 TOXO94900 526 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 GLCEO94923 617 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 QDPRP09417 244 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 CTSSP25774 331 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 HTR1FP30939 366 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 FMO3P31513 532 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 GUCA1AP43080 201 aaPredicted RBP6.52□□□□□ -1.37
CD44-228ENST00000528455 CA7P43166 264 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 OR3A2P47893 321 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 SELENOPP49908 381 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 PER3P56645 1201 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 CLRN1P58418 232 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 RPL11P62913 178 aaKnown RBP6.52□□□□□ -1.37
CD44-228ENST00000528455 RUNX1T1Q06455 604 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 PMPCAQ10713 525 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 C1QTNF12Q5T7M4 302 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 LAIR2Q6ISS4 152 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 NIPAL3Q6P499 406 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 PLBD1Q6P4A8 553 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 SEM1Q6ZVN7 128 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 NUFIP2Q7Z417 695 aaKnown RBP6.52□□□□□ -1.37
CD44-228ENST00000528455 ABHD12BQ7Z5M8 362 aaPredicted RBP6.52□□□□□ -1.37
CD44-228ENST00000528455 ZNF100Q8IYN0 542 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 Q8N1Y9 231 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 C9orf106Q8NAJ2 232 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 SYT14Q8NB59 555 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 OR6K3Q8NGY3 331 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 OR6N1Q8NGY5 312 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 MCHR2Q969V1 340 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 BOD1Q96IK1 185 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 ZNF582Q96NG8 517 aaPredicted RBP6.52□□□□□ -1.37
CD44-228ENST00000528455 DMRTA2Q96SC8 542 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 WACQ9BTA9 647 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 NUAK2Q9H093 628 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 B3GAT2Q9NPZ5 323 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 HINT3Q9NQE9 182 aaKnown RBP6.52□□□□□ -1.37
CD44-228ENST00000528455 ASB6Q9NWX5 421 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 SCN3BQ9NY72 215 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 PLEKHB1Q9UF11 243 aaPredicted RBP6.52□□□□□ -1.37
CD44-228ENST00000528455 ERRFI1Q9UJM3 462 aaPredicted RBP6.52□□□□□ -1.37
CD44-228ENST00000528455 OSGIN2Q9Y236 505 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 EXOGQ9Y2C4 368 aaKnown RBP6.52□□□□□ -1.37
CD44-228ENST00000528455 GPR52Q9Y2T5 361 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 TPRKBQ9Y3C4 175 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 PCDHGB1Q9Y5G3 927 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 FAM215AQ9Y5M1 114 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 FREM1Q5H8C1 2179 aa6.52□□□□□ -1.37
CD44-228ENST00000528455 CRYBG3Q68DQ2 2970 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms