RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 BST1Q10588 318 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 SPP2Q13103 211 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 APOFQ13790 326 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 TAF1AQ15573 450 aaPredicted RBP2.89□□□□□ -1.95
CD44-217ENST00000525348 USF2Q15853 346 aaPredicted RBP2.89□□□□□ -1.95
CD44-217ENST00000525348 ATP6AP1Q15904 470 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 SGCBQ16585 318 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 EXOC3L4Q17RC7 722 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 C17orf58Q2M2W7 97 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 PPM1LQ5SGD2 360 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 PHYHD1Q5SRE7 291 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 PRAMEF5Q5TYX0 476 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 LYPLAL1Q5VWZ2 237 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 PRAMEF6Q5VXH4 476 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 NCR3LG1Q68D85 454 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 OR6B2Q6IFH4 312 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 FAM199XQ6PEV8 388 aaPredicted RBP2.89□□□□□ -1.95
CD44-217ENST00000525348 TMEM220Q6QAJ8 160 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 SCIMPQ6UWF3 145 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 CLEC18BQ6UXF7 455 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 CD300LGQ6UXG3 332 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 DLEU7Q6UYE1 221 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 SPNS3Q6ZMD2 512 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 MBOAT1Q6ZNC8 495 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 FAM92BQ6ZTR7 304 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 SLC35D2Q76EJ3 337 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 SLC16A14Q7RTX9 510 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 SLC16A13Q7RTY0 426 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 C16orf62Q7Z3J2 963 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 GPBP1Q86WP2 473 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 FAM58AQ8N1B3 248 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 VPS8Q8N3P4 1428 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 SVOPLQ8N434 492 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 ZNF491Q8N8L2 437 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 NHLRC2Q8NBF2 726 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 ACBD4Q8NC06 268 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 RNF149Q8NC42 400 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 GLYATL2Q8WU03 294 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 GTSF1Q8WW33 167 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 AP3S1Q92572 193 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 ADIPOR1Q96A54 375 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 S100PBPQ96BU1 408 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 ZHX1-C8orf76Q96EF9 292 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 SLC41A3Q96GZ6 507 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 CPB2Q96IY4 423 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 RNF170Q96K19 258 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 PRRC1Q96M27 445 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 TMEM56Q96MV1 263 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 PRAP1Q96NZ9 151 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 RASL10BQ96S79 203 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 HBEGFQ99075 208 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 HOPXQ9BPY8 73 aaPredicted RBP2.89□□□□□ -1.95
CD44-217ENST00000525348 ZNF2Q9BSG1 426 aaPredicted RBP2.89□□□□□ -1.95
CD44-217ENST00000525348 MED18Q9BUE0 208 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 TMED9Q9BVK6 235 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 GGACTQ9BVM4 153 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 HINT2Q9BX68 163 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 ERVK-6Q9BXR3 956 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 TRIM9Q9C026 710 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 PCBD2Q9H0N5 130 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 NXF3Q9H4D5 531 aaKnown RBP2.89□□□□□ -1.95
CD44-217ENST00000525348 DCLRE1BQ9H816 532 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 CSNK1G1Q9HCP0 422 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 UBE2TQ9NPD8 197 aaPredicted RBP2.89□□□□□ -1.95
CD44-217ENST00000525348 NIT2Q9NQR4 276 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 BIN3Q9NQY0 253 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 NANSQ9NR45 359 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 CTPS2Q9NRF8 586 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 PNO1Q9NRX1 252 aaKnown RBP2.89□□□□□ -1.95
CD44-217ENST00000525348 DDX19AQ9NUU7 478 aaKnown RBP2.89□□□□□ -1.95
CD44-217ENST00000525348 IMPAD1Q9NX62 359 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 ONECUT1Q9UBC0 465 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 Q9UF83 564 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 MLXQ9UH92 298 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 OPN4Q9UHM6 478 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 GLS2Q9UI32 602 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 MGAT4BQ9UQ53 548 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 STRAPQ9Y3F4 350 aaKnown RBP2.89□□□□□ -1.95
CD44-217ENST00000525348 WIF1Q9Y5W5 379 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 ALG5Q9Y673 324 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 HSPE1-MOB4S4R3N1 261 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 TMEM56-RWDD3S4R434 201 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 USP32Q8NFA0 1604 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 PLEKHH2Q8IVE3 1493 aa2.89□□□□□ -1.95
CD44-217ENST00000525348 CARMIL3Q8ND23 1372 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 ABCA3Q99758 1704 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 ZNF609O15014 1411 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 A0A1B0GUH1 482 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 A0A1W2PQL4 384 aaPredicted RBP2.88□□□□□ -1.95
CD44-217ENST00000525348 A6NIZ1 184 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 YDJCA8MPS7 323 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 PDZK1P1A8MUH7 402 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 K7EP13 123 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 K7EQM0 130 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 CDC7O00311 574 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 CHADO15335 359 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 NME2P1O60361 137 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 UGT1A9O60656 530 aa2.88□□□□□ -1.95
CD44-217ENST00000525348 NME6O75414 186 aaPredicted RBP2.88□□□□□ -1.95
CD44-217ENST00000525348 GRAP2O75791 330 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms