RNA–Protein interactions for RNA: ENST00000522552.5

SKP1-209, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SKP1, Length 1,683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-209ENST00000522552 SIX2Q9NPC8 291 aa3.32□□□□□ -1.88
SKP1-209ENST00000522552 ADARB2Q9NS39 739 aaKnown RBP3.32□□□□□ -1.88
SKP1-209ENST00000522552 Q9UF83 564 aa3.32□□□□□ -1.88
SKP1-209ENST00000522552 MMP17Q9ULZ9 603 aa3.32□□□□□ -1.88
SKP1-209ENST00000522552 TIMM22Q9Y584 194 aa3.32□□□□□ -1.88
SKP1-209ENST00000522552 MN1Q10571 1320 aaPredicted RBP3.32□□□□□ -1.88
SKP1-209ENST00000522552 KIAA1210Q9ULL0 1709 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 GREB1LQ9C091 1923 aaPredicted RBP3.31□□□□□ -1.88
SKP1-209ENST00000522552 SMIM28A0A1B0GU29 152 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 EFCAB7A8K855 629 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 HIDE1A8MVS5 230 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 H0Y980 276 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 PDHXO00330 501 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 SLC16A4O15374 487 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 DENRO43583 198 aaKnown RBP3.31□□□□□ -1.88
SKP1-209ENST00000522552 PROP1O75360 226 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 FRAT2O75474 233 aaPredicted RBP3.31□□□□□ -1.88
SKP1-209ENST00000522552 MPZL1O95297 269 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 GCGP01275 180 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 IGHV3-9P01782 118 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 LIPCP11150 499 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 ZNF250P15622 560 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 MAKP20794 623 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 DVL1P1P54792 670 aaPredicted RBP3.31□□□□□ -1.88
SKP1-209ENST00000522552 MFAP2P55001 183 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 DHODHQ02127 395 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 RAB31Q13636 194 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 FLOT2Q14254 428 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 MTF1Q14872 753 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 TRIP6Q15654 476 aaKnown RBP3.31□□□□□ -1.88
SKP1-209ENST00000522552 MOGQ16653 247 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 C2CD6Q53TS8 623 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 MARCH8Q5T0T0 291 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 CPTPQ5TA50 214 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 REP15Q6BDI9 236 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 FRMPD2BQ6IN97 320 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 ZNF425Q6IV72 752 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 NIPAL1Q6NVV3 410 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 ZNF788Q6ZQV5 615 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 CHMP1BQ7LBR1 199 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 FAM19A1Q7Z5A9 133 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 FBXO16Q8IX29 292 aaPredicted RBP3.31□□□□□ -1.88
SKP1-209ENST00000522552 PUSL1Q8N0Z8 303 aaKnown RBP3.31□□□□□ -1.88
SKP1-209ENST00000522552 ZFP82Q8N141 532 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 ZNF491Q8N8L2 437 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 HSD17B11Q8NBQ5 300 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 SPPL2AQ8TCT8 520 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 SFXN5Q8TD22 340 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 ADAMTS16Q8TE57 1224 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 FGF11Q92914 225 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 SORCS2Q96PQ0 1159 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 AGMATQ9BSE5 352 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 HES7Q9BYE0 225 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 HOXD1Q9GZZ0 328 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 ELL3Q9HB65 397 aaPredicted RBP3.31□□□□□ -1.88
SKP1-209ENST00000522552 C6orf50Q9HD87 102 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 ZNF446Q9NWS9 450 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 GIN1Q9NXP7 522 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 TFR2Q9UP52 801 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 SNX24Q9Y343 169 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 FBXO7Q9Y3I1 522 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 WIF1Q9Y5W5 379 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 MRPS18BQ9Y676 258 aaKnown RBP3.31□□□□□ -1.88
SKP1-209ENST00000522552 STYXL1Q9Y6J8 313 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 ELP1O95163 1332 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 ANKRD30AQ9BXX3 1397 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 USP6P35125 1406 aa3.31□□□□□ -1.88
SKP1-209ENST00000522552 COL22A1Q8NFW1 1626 aaPredicted RBP3.31□□□□□ -1.88
SKP1-209ENST00000522552 IGHV4OR15-8A0A075B7B6 117 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 IGHV3-20A0A0C4DH32 117 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 LOC105371267A0A1B0GV96 52 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 MEIOCA2RUB1 952 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 LYRM9A8MSI8 78 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 J3QLI3 93 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 K7EMT4 169 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 ZNF749O43361 778 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 MBTPS2O43462 519 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 IL6P05231 212 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 ZNF20P17024 532 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 IGFBP3P17936 291 aaPredicted RBP3.3□□□□□ -1.88
SKP1-209ENST00000522552 TBPP20226 339 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 SLC2A5P22732 501 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 MSNP26038 577 aaKnown RBP3.3□□□□□ -1.88
SKP1-209ENST00000522552 GSK3BP49841 420 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 CSRP3P50461 194 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 BIDP55957 195 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 OR10A3P58181 314 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 ARF6P62330 175 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 PRKCDQ05655 676 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 CKAP4Q07065 602 aaKnown RBP3.3□□□□□ -1.88
SKP1-209ENST00000522552 CDC20Q12834 499 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 ILF3Q12906 894 aaKnown RBP eCLIP3.3□□□□□ -1.88
SKP1-209ENST00000522552 ECH1Q13011 328 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 NAB1Q13506 487 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 ASAH1Q13510 395 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 LCLAT1Q6UWP7 414 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 Q6ZPA2 131 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 Q6ZT83 130 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 GGNQ86UU5 652 aa3.3□□□□□ -1.88
SKP1-209ENST00000522552 ZNF564Q8TBZ8 553 aaPredicted RBP3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms