RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 DND1Q8IYX4 353 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 CLP1Q92989 425 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 MUCL1Q96DR8 90 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 OR5B2Q96R09 309 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 PHB2Q99623 299 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 RNF126Q9BV68 326 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 CST11Q9H112 138 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 OR52D1Q9H346 318 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 SPHK2Q9NRA0 654 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 GAB2Q9UQC2 676 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 SLC22A31A6NKX4 558 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 DDNO94850 711 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 PGA4P0DJD7 388 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 PGA5P0DJD9 388 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 TEAD1P28347 426 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 HOXD9P28356 352 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 GPR3P46089 330 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 OAZ1P54368 228 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 FKBP1AP62942 108 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 HNF4GQ14541 408 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 MOGAT2Q3SYC2 334 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 FJX1Q86VR8 437 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 SLC35G3Q8N808 338 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 HSD17B11Q8NBQ5 300 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 OR52L1Q8NGH7 329 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 OR13C9Q8NGT0 318 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 KISS1RQ969F8 398 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 CXorf40BQ96DE9 158 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 FAM122AQ96E09 287 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 NEURL3Q96EH8 262 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 CERS4Q9HA82 394 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 PARD6AQ9NPB6 346 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 P2RX2Q9UBL9 471 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 ARID1BQ8NFD5 2236 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 LSSP48449 732 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 ST3GAL3Q11203 375 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 ASB11Q8WXH4 323 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 EXTL1Q92935 676 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 TMEM159Q96B96 161 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 PAAF1Q9BRP4 392 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 TMEM106CQ9BVX2 250 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 R3HDMLQ9H3Y0 253 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 PDFQ9HBH1 243 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 ADGRL4Q9HBW9 690 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 DNAJC4Q9NNZ3 241 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 WDR45Q9Y484 360 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 PDCD11Q14690 1871 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 RLFQ13129 1914 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 SSC5DA1L4H1 1573 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 RPL36A-HNRNPH2H7BZ11 118 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 MTX2O75431 263 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 RPP14O95059 124 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 SELEP16581 610 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 ERVFRD-1P60508 538 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 SOHLH1Q5JUK2 328 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 ZNF774Q6NX45 483 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 METTL27Q8N6F8 245 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 CLEC1AQ8NC01 280 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 ZG16BQ96DA0 208 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 SLC25A21Q9BQT8 299 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 ADAM19Q9H013 955 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 OR5AC2Q9NZP5 309 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 SUSD2Q9UGT4 822 aa10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 PCYT1BQ9Y5K3 369 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-213ENST00000511496 A0A1W2PPC1 479 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 TP53I11O14683 189 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 F13BP05160 661 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 LGALS2P05162 132 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 GUSBP08236 651 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 OR4Q2P0C623 313 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 TFPI2P48307 235 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 BTG2P78543 158 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 ELOBQ15370 118 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 CCSMST1Q4G0I0 132 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 FAM71E1Q6IPT2 247 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 GRHL2Q6ISB3 625 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 ZNF627Q7L945 461 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 ZNF558Q96NG5 402 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 SLC17A9Q9BYT1 436 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 ZNF346Q9UL40 294 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 A0A087WUJ7 227 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 SLC38A8A6NNN8 435 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 GMFGO60234 142 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 C8GP07360 202 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 ZGLP1P0C6A0 271 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 ADAM8P78325 824 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 CRMP1Q14194 572 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 MED27Q6P2C8 311 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 KLHDC9Q8NEP7 349 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 OR1N1Q8NGS0 311 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 SERINC2Q96SA4 455 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 URM1Q9BTM9 101 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 BRF2Q9HAW0 419 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 GSKIPQ9P0R6 139 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 TMED3Q9Y3Q3 217 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 LCTP09848 1927 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 SERTM1A2A2V5 107 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 H0YIV9 168 aa10.93□□□□□ -0.66
LIMCH1-213ENST00000511496 ZNF354AO60765 605 aaPredicted RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms