RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 DTWD2Q8NBA8 298 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OR4C16Q8NGL9 310 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TGM7Q96PF1 710 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 MAB21L2Q9Y586 359 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 HSPB2A8KAH6 182 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RBBP9O75884 186 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 S100A6P06703 90 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RAP2BP61225 183 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 GUCA2AQ02747 115 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SCRN3Q0VDG4 424 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 HSPB2Q16082 182 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 AANATQ16613 207 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PCGF3Q3KNV8 242 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OR4D10Q8NGI6 311 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OR1F2PQ96R84 312 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OR8B4Q96RC9 309 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 GSX2Q9BZM3 304 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 NRSN2Q9GZP1 204 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 KCNK15Q9H427 330 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ELOVL3Q9HB03 270 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 GPN1Q9HCN4 374 aaPredicted RBP14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SOHLH2Q9NX45 425 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 B9D1Q9UPM9 204 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 KLF2Q9Y5W3 355 aaPredicted RBP14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CPAMD8Q8IZJ3 1885 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 IGKV3D-11A0A0A0MRZ8 115 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 GGT3PA6NGU5 568 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 C11orf98E9PRG8 122 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 I3L521 148 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PHYHO14832 338 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ITGA5P08648 1049 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 HOXD4P09016 255 aaPredicted RBP14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RRASP10301 218 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OR1D4P47884 311 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SLC6A8P48029 635 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SLC17A1Q14916 467 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 C2orf68Q2NKX9 166 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 NKAIN2Q5VXU1 208 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 POMZP3Q6PJE2 187 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 MARCH3Q86UD3 253 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PPP1R14AQ96A00 147 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 FOXN4Q96NZ1 517 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SLC38A3Q99624 504 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PTDSS2Q9BVG9 487 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 NUDT9Q9BW91 350 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TMPRSS13Q9BYE2 586 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 UCK1Q9HA47 277 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SLC39A1Q9NY26 324 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 R4GN57 208 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 DCHS1Q96JQ0 3298 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 COL5A1P20908 1838 aaPredicted RBP14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CACNA1EQ15878 2313 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 LILRA5A6NI73 299 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 H3BMH7 237 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 HCRTR2O43614 444 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PNPP00491 289 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CXCR1P25024 350 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 MEP1BQ16820 701 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 YOD1Q5VVQ6 348 aaPredicted RBP14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ELMOD3Q96FG2 381 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 WBP1Q96G27 269 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SFXN2Q96NB2 322 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SMOC1Q9H4F8 434 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PDE7BQ9NP56 450 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SLC22A13Q9Y226 551 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 MMACHCQ9Y4U1 282 aa14.49□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TRAV36DV7A0A075B6V5 113 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CDC14CA4D256 554 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 MCRIP1C9JLW8 97 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 KDM4BO94953 1096 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 FBXO45P0C2W1 286 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CSF2RBP32927 897 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 POU3F4P49335 361 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 C2orf76Q3KRA6 126 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 NHLRC3Q5JS37 347 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 FAM166AQ6J272 317 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SLC35D2Q76EJ3 337 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ZNF519Q8TB69 540 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 GAL3ST4Q96RP7 486 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 MRPL22Q9NWU5 206 aaKnown RBP14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 KMT2EQ8IZD2 1858 aa14.48□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPL8 197 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OR6C65A6NJZ3 312 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TMEM150CB9EJG8 249 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TSPAN2O60636 221 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PLGP00747 810 aaPredicted RBP14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TDGF1P13385 188 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 NFYAP23511 347 aaPredicted RBP14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 INSM1Q01101 510 aaPredicted RBP14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RBMS2Q15434 407 aaKnown RBP14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TEX30Q5JUR7 227 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TTLL10Q6ZVT0 673 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RNF128Q8TEB7 428 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TSEN15Q8WW01 171 aaKnown RBP14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 GINS4Q9BRT9 223 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 FANCFQ9NPI8 374 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CUTCQ9NTM9 273 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 COQ3Q9NZJ6 369 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 MRTO4Q9UKD2 239 aaKnown RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms