RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 WACQ9BTA9 647 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 ZNF426Q9BUY5 554 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 ALG12Q9BV10 488 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 NANOGQ9H9S0 305 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 TUBG2Q9NRH3 451 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 DDX28Q9NUL7 540 aaKnown RBP9.88□□□□□ -0.83
COL6A3-213ENST00000493475 NDRG4Q9ULP0 352 aaKnown RBP9.88□□□□□ -0.83
COL6A3-213ENST00000493475 C5orf49A4QMS7 147 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 A6NIZ1 184 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 C12orf71A8MTZ7 269 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 HMGB1P1B2RPK0 211 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-213ENST00000493475 SURF4O15260 269 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 SPRY1O43609 319 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-213ENST00000493475 FOXH1O75593 365 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 TRMUO75648 421 aaKnown RBP9.87□□□□□ -0.83
COL6A3-213ENST00000493475 VENTXO95231 258 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 CLPTM1O96005 669 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 NPPAP01160 153 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 COMPP49747 757 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-213ENST00000493475 UGT2B15P54855 530 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 RAP1BP61224 184 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 RAP1AP62834 184 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 ST3GAL3Q11203 375 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 HIST3H3Q16695 136 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 MSMPQ1L6U9 139 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 ANKDD1AQ495B1 522 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 ALG10Q5BKT4 473 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 BEND6Q5SZJ8 279 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-213ENST00000493475 CCDC80Q76M96 950 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 CARM1Q86X55 608 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 KLHL36Q8N4N3 616 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 SPICQ8N5J4 248 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 LRRC17Q8N6Y2 441 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 NPEPL1Q8NDH3 523 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 GPR32P1Q8NGA4 272 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 OR8J3Q8NGG0 315 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 ASB10Q8WXI3 467 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 ZNF347Q96SE7 839 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 GPA33Q99795 319 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 C7orf69Q9H7B7 122 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 WIPI2Q9Y4P8 454 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 TIMM10BQ9Y5J6 103 aa9.87□□□□□ -0.83
COL6A3-213ENST00000493475 LOC105371242A0A075B767 164 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 LOC100996750A0A140TA64 210 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 BBIP1A8MTZ0 92 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 SPRY3O43610 288 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 PLPP2O43688 288 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 TIMM8AO60220 97 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-213ENST00000493475 IGHV2-5P01817 119 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 TNFRSF1AP19438 455 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 GLO1Q04760 184 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 MBNL2Q5VZF2 373 aaKnown RBP9.86□□□□□ -0.83
COL6A3-213ENST00000493475 PCYOX1LQ8NBM8 494 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 FGFBP3Q8TAT2 258 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 ABHD4Q8TB40 342 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 NSMAFQ92636 917 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 TAMM41Q96BW9 452 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 MAGEB18Q96M61 343 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 SEPHS2Q99611 448 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 WFDC6Q9BQY6 131 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 MRPL13Q9BYD1 178 aaKnown RBP9.86□□□□□ -0.83
COL6A3-213ENST00000493475 KRTAP4-6Q9BYQ5 205 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 PLA2G12AQ9BZM1 189 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 TXNIPQ9H3M7 391 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 ZMAT3Q9HA38 289 aaKnown RBP9.86□□□□□ -0.83
COL6A3-213ENST00000493475 G6PC2Q9NQR9 355 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 GID8Q9NWU2 228 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 UBAP1Q9NZ09 502 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 RIMS3Q9UJD0 308 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 AP3M1Q9Y2T2 418 aa9.86□□□□□ -0.83
COL6A3-213ENST00000493475 PPIAL4EA0A075B759 164 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 PPIAL4CA0A0B4J2A2 164 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 A0A0G2JND7 137 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 TMEM89A2RUT3 159 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 PPIAL4DF5H284 164 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 XKRYO14609 159 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 CST2P09228 141 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 MMP7P09237 267 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-213ENST00000493475 PPIAL4FP0DN26 164 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 TROVE2P10155 538 aaKnown RBP eCLIP9.85□□□□□ -0.83
COL6A3-213ENST00000493475 ZNF32P17041 273 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 AQP2P41181 271 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 ZNF133P52736 654 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-213ENST00000493475 PPP1CBP62140 327 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 SCRN3Q0VDG4 424 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 TOP3AQ13472 1001 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-213ENST00000493475 ARMCX4Q5H9R4 360 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 COQ5Q5HYK3 327 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 FAM27BQ5VT28 67 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 RRM2BQ7LG56 351 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 SYT9Q86SS6 491 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 RBM45Q8IUH3 476 aaKnown RBP9.85□□□□□ -0.83
COL6A3-213ENST00000493475 PAQR4Q8N4S7 273 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-213ENST00000493475 TMEM255BQ8WV15 326 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 LIPHQ8WWY8 451 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 TSPAN32Q96QS1 320 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 MRI1Q9BV20 369 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 RSPO3Q9BXY4 272 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-213ENST00000493475 NPHS2Q9NP85 383 aa9.85□□□□□ -0.83
COL6A3-213ENST00000493475 MEPEQ9NQ76 525 aaPredicted RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms