RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 DNASE2O00115 360 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CDC7O00311 574 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 BTN3A3O00478 584 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ITGB1BP1O14713 200 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SIGLEC5O15389 551 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF749O43361 778 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RAD51CO43502 376 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MED7O43513 233 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 BCL2L11O43521 198 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TLX2O43763 284 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CALUO43852 315 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 GMFGO60234 142 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 OR10H3O60404 316 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 DPM1O60762 260 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 FCGR3BO75015 233 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CRCPO75575 148 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ATG12O94817 140 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 GADD45GO95257 159 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 LGI1O95970 557 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CYB5R3P00387 301 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PNPP00491 289 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 GBAP04062 536 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RLN2P04090 185 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 IFNA6P05013 189 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 S100A8P05109 93 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 UGT2B4P06133 528 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MELTFP08582 738 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 HOXC4P09017 264 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SBK2P0C263 348 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ACSM4P0C7M7 580 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 UQCRFS1P1P0C7P4 283 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 NPIPA8P0DM63 369 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RALBP11234 206 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 COX4I1P13073 169 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TCF4P15884 667 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MUC1P15941 1255 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CBR1P16152 277 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF25P17030 456 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TAC1P20366 129 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ATP6V1B2P21281 511 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ZP3P21754 424 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PTPN6P29350 595 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CD40LGP29965 261 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 HOXA9P31269 272 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 FMO3P31513 532 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 FCGR2BP31994 310 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 FCGR2CP31995 323 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 DUTP33316 252 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RORAP35398 523 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TGFBR2P37173 567 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MAP3K8P41279 467 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MAGEA1P43355 309 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 GPR4P46093 362 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 GNPDA1P46926 289 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 NPBWR1P48145 328 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 KCNJ3P48549 501 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SLC1A6P48664 564 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RBP2P50120 134 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 NPY4RP50391 375 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ATP4BP51164 291 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 XKP51811 444 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 NDUFA8P51970 172 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CRYBA2P53672 197 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 UGT2B15P54855 530 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PKNOX1P55347 436 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 UBE2G2P60604 165 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CXCR4P61073 352 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SNRPD2P62316 118 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RBX1P62877 108 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TNNC1P63316 161 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CDKL1Q00532 357 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 REEP5Q00765 189 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 FGL1Q08830 312 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 INCA1Q0VD86 236 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 BST1Q10588 318 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 BST2Q10589 180 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 STX4Q12846 297 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SLAQ13239 276 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ASAH1Q13510 395 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TRAM1Q15629 374 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ATP6AP1Q15904 470 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TAZQ16635 292 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PDK4Q16654 411 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 UBE2SQ16763 222 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 KNOP1Q1ED39 458 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 HKDC1Q2TB90 917 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TRMT5Q32P41 509 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 LINC00303Q3SY05 128 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PARP15Q460N3 678 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 FAM74A3Q4VXF1 159 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SLC39A12Q504Y0 691 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 HIKESHIQ53FT3 197 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 HSD17B12Q53GQ0 312 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 EIPR1Q53HC9 387 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF311Q5JNZ3 666 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PABPC1L2AQ5JQF8 200 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RABGAP1LQ5R372 815 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RIPPLY2Q5TAB7 128 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 OGFRL1Q5TC84 451 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SEL1L2Q5TEA6 688 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms