RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 FAM49BQ9NUQ9 324 aa2□□□□□ -2.09
PTPN4-212ENST00000488896 ISY1Q9ULR0 285 aaKnown RBP2□□□□□ -2.09
PTPN4-212ENST00000488896 SNX6Q9UNH7 406 aa2□□□□□ -2.09
PTPN4-212ENST00000488896 ATP6V0A2Q9Y487 856 aa2□□□□□ -2.09
PTPN4-212ENST00000488896 SHANK1Q9Y566 2161 aa2□□□□□ -2.09
PTPN4-212ENST00000488896 BPY2O14599 106 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 DCKP27707 260 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 MAGEA8P43361 318 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 YAP1P46937 504 aaKnown RBP1.99□□□□□ -2.09
PTPN4-212ENST00000488896 CCT3P49368 545 aaKnown RBP1.99□□□□□ -2.09
PTPN4-212ENST00000488896 CLINT1Q14677 625 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 CCDC152Q4G0S7 254 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 ANKRD22Q5VYY1 191 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 METTL21CQ5VZV1 264 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 TMEM135Q86UB9 458 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 WDFY1Q8IWB7 410 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 TMEM104Q8NE00 496 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 RLN3Q8WXF3 142 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 CNN2Q99439 309 aaKnown RBP1.99□□□□□ -2.09
PTPN4-212ENST00000488896 TRIM62Q9BVG3 475 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 AZI2Q9H6S1 392 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 NIPAL2Q9H841 368 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 KLHL28Q9NXS3 571 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 DHCR7Q9UBM7 475 aaKnown RBP1.99□□□□□ -2.09
PTPN4-212ENST00000488896 ADAM28Q9UKQ2 775 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 ATP10AO60312 1499 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 ADGRL1O94910 1474 aa1.99□□□□□ -2.09
PTPN4-212ENST00000488896 ZNF716A6NP11 495 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 POLR1CO15160 346 aaPredicted RBP1.98□□□□□ -2.09
PTPN4-212ENST00000488896 C1orf105O95561 183 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 ZNF735P0CB33 412 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 FBXW4P57775 412 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 FLI1Q01543 452 aaPredicted RBP1.98□□□□□ -2.09
PTPN4-212ENST00000488896 CCNJQ5T5M9 372 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 OR2A2Q6IF42 318 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 TVP23CQ96ET8 276 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 PIK3IP1Q96FE7 263 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 PLEKHA8Q96JA3 519 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 ZNF488Q96MN9 340 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 SH3GL1Q99961 368 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 TBL1YQ9BQ87 522 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 KCNJ16Q9NPI9 418 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 CTNNA3Q9UI47 895 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 BLOC1S6Q9UL45 172 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 CDH9Q9ULB4 789 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 DOCK8Q8NF50 2099 aa1.98□□□□□ -2.09
PTPN4-212ENST00000488896 DNASE2O00115 360 aaPredicted RBP1.97□□□□□ -2.09
PTPN4-212ENST00000488896 NDC80O14777 642 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 SNNO75324 88 aaPredicted RBP1.97□□□□□ -2.09
PTPN4-212ENST00000488896 HLA-DQB1P01920 261 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 CD74P04233 296 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 CASP14P31944 242 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 SSTR5P35346 364 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 GDI2P50395 445 aaKnown RBP1.97□□□□□ -2.09
PTPN4-212ENST00000488896 PRKCDQ05655 676 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 FBXW12Q6X9E4 464 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 Q6ZPB1 254 aaPredicted RBP1.97□□□□□ -2.09
PTPN4-212ENST00000488896 LRRC74BQ6ZQY2 392 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 TEX9Q8N6V9 391 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 TMEM105Q8N8V8 129 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 SHC3Q92529 594 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 SLC25A46Q96AG3 418 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 COQ2Q96H96 371 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 PSKH2Q96QS6 385 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 NPY6RQ99463 290 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 TIMM17AQ99595 171 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 ENOPH1Q9UHY7 261 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 PIGLQ9Y2B2 252 aa1.97□□□□□ -2.09
PTPN4-212ENST00000488896 MRPS7Q9Y2R9 242 aaKnown RBP1.97□□□□□ -2.09
PTPN4-212ENST00000488896 C5orf63A6NC05 138 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 H0YCG3 227 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 GOSR2O14653 212 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 PPP1R2P9O14990 202 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 MAGEB3O15480 346 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 GMFGO60234 142 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 IL1RNP18510 177 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 EPS15P42566 896 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 IFNAR2P48551 515 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 ECH1Q13011 328 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 ORMDL2Q53FV1 153 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 CFAP157Q5JU67 520 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 THEM4Q5T1C6 240 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 ATAD3BQ5T9A4 648 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 ST20-AS1Q8NBB2 130 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 FAM83FQ8NEG4 500 aaPredicted RBP1.96□□□□□ -2.1
PTPN4-212ENST00000488896 STEAP2Q8NFT2 490 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 PIFOQ8TCI5 191 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 OR52D1Q9H346 318 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 SLC38A10Q9HBR0 1119 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 EPS15L1Q9UBC2 864 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 TMED5Q9Y3A6 229 aa1.96□□□□□ -2.1
PTPN4-212ENST00000488896 TSSC4Q9Y5U2 329 aaPredicted RBP1.96□□□□□ -2.1
PTPN4-212ENST00000488896 TRAV26-1A0A087WT03 109 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 A0A1B0GVL5 298 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 DBTP11182 482 aaKnown RBP1.95□□□□□ -2.1
PTPN4-212ENST00000488896 VHLP40337 213 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 UBE2HP62256 183 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 EXOC3L2Q2M3D2 409 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 SPINT4Q6UDR6 99 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 SNX20Q7Z614 316 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms