RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	FAM205BP	Q63HN1	556 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	GPR139	Q6DWJ6	353 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	ABLIM2	Q6H8Q1	611 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	CD300LD	Q6UXZ3	194 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	NUFIP2	Q7Z417	695 aa	Known RBP	7.64	□□□□□ -1.19
USP4-213	ENST00000488520	TMEM179B	Q7Z7N9	219 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	JAZF1	Q86VZ6	243 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	POMGNT2	Q8NAT1	580 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	KBTBD8	Q8NFY9	601 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	OR13C2	Q8NGS9	318 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	MOSPD2	Q8NHP6	518 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	FANK1	Q8TC84	345 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	FNDC8	Q8TC99	324 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	MAGEE2	Q8TD90	523 aa	Predicted RBP	7.64	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF566	Q969W8	418 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	TMEM45B	Q96B21	275 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	S100PBP	Q96BU1	408 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	PLEKHA8	Q96JA3	519 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	SAMD8	Q96LT4	415 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	ERMAP	Q96PL5	475 aa	Predicted RBP	7.64	□□□□□ -1.19
USP4-213	ENST00000488520	FUZ	Q9BT04	418 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	EMC6	Q9BV81	110 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	TSSK6	Q9BXA6	273 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	HDHD5	Q9BXW7	423 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	OR52D1	Q9H346	318 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	TXNIP	Q9H3M7	391 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	NTN4	Q9HB63	628 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	PAPOLB	Q9NRJ5	636 aa	Known RBP	7.64	□□□□□ -1.19
USP4-213	ENST00000488520	VNN3	Q9NY84	501 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	SEC14L4	Q9UDX3	406 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF346	Q9UL40	294 aa	Known RBP	7.64	□□□□□ -1.19
USP4-213	ENST00000488520	OAZ3	Q9UMX2	235 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	BAIAP2	Q9UQB8	552 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	SIGLEC7	Q9Y286	467 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	IER3IP1	Q9Y5U9	82 aa		7.64	□□□□□ -1.19
USP4-213	ENST00000488520	IGHV4-30-2	A0A087WSY4	118 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF814	B7Z6K7	855 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520		H3BNX3	289 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	IMPA2	O14732	288 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	RAMP1	O60894	148 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	HTR3B	O95264	441 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	HPR	P00739	348 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	REN	P00797	406 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	IFNG	P01579	166 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	IGHG1	P01857	330 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	HMGN1	P05114	100 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	FAM157C	P0CG43	387 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	HLA-DOB	P13765	273 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	ACADS	P16219	412 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	OR3A2	P47893	321 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	CSNK1A1	P48729	337 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF84	P51523	738 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	P2RY4	P51582	365 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	ESRRG	P62508	458 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	MYBPC1	Q00872	1141 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	SLC34A1	Q06495	639 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	TOP3A	Q13472	1001 aa	Predicted RBP	7.63	□□□□□ -1.19
USP4-213	ENST00000488520	CAMK2D	Q13557	499 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	TRIP10	Q15642	601 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF672	Q499Z4	452 aa	Predicted RBP	7.63	□□□□□ -1.19
USP4-213	ENST00000488520	CLEC12A	Q5QGZ9	265 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	NCMAP	Q5T1S8	102 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	FBXW9	Q5XUX1	488 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	ADAM5	Q6NVV9	412 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	IGFN1	Q86VF2	1251 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	EPHX4	Q8IUS5	362 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	OR2T33	Q8NG76	320 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	OR6X1	Q8NH79	312 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	SLC25A44	Q96H78	314 aa	Predicted RBP	7.63	□□□□□ -1.19
USP4-213	ENST00000488520	TXNDC15	Q96J42	360 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	LRR1	Q96L50	414 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF570	Q96NI8	536 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF385A	Q96PM9	386 aa	Known RBP	7.63	□□□□□ -1.19
USP4-213	ENST00000488520	CIB1	Q99828	191 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	NIPSNAP1	Q9BPW8	284 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	RHNO1	Q9BSD3	238 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	KATNB1	Q9BVA0	655 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	BEX2	Q9BXY8	128 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	PRRG3	Q9BZD7	231 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	KCNN2	Q9H2S1	579 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	VCX3B	Q9H321	246 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	C8orf4	Q9NR00	106 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	ASB6	Q9NWX5	421 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	MED29	Q9NX70	200 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	H2AFY2	Q9P0M6	372 aa	Predicted RBP	7.63	□□□□□ -1.19
USP4-213	ENST00000488520	IL20RA	Q9UHF4	553 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	RCE1	Q9Y256	329 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	GPR52	Q9Y2T5	361 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	CDH10	Q9Y6N8	788 aa		7.63	□□□□□ -1.19
USP4-213	ENST00000488520	CENPBD1	B2RD01	187 aa		7.62	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF587B	E7ETH6	402 aa		7.62	□□□□□ -1.19
USP4-213	ENST00000488520		M0R3G1	203 aa		7.62	□□□□□ -1.19
USP4-213	ENST00000488520	PDLIM1	O00151	329 aa		7.62	□□□□□ -1.19
USP4-213	ENST00000488520	AHCYL1	O43865	530 aa		7.62	□□□□□ -1.19
USP4-213	ENST00000488520	FZD7	O75084	574 aa		7.62	□□□□□ -1.19
USP4-213	ENST00000488520	CD8A	P01732	235 aa		7.62	□□□□□ -1.19
USP4-213	ENST00000488520	IGHV3-9	P01782	118 aa		7.62	□□□□□ -1.19
USP4-213	ENST00000488520	ZNF16	P17020	682 aa	Predicted RBP	7.62	□□□□□ -1.19
USP4-213	ENST00000488520	PSMB1	P20618	241 aa	Known RBP	7.62	□□□□□ -1.19
USP4-213	ENST00000488520	IL32	P24001	234 aa		7.62	□□□□□ -1.19

Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms