RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MCRIP1C9JLW8 97 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 MYF5P13349 255 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 POLR2HP52434 150 aaKnown RBP16.15■□□□□ 0.18
VIM-206ENST00000487938 H2BFSP57053 126 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 DCAF7P61962 342 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 SQSTM1Q13501 440 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 TEX30Q5JUR7 227 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 FDX2Q6P4F2 183 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 SYT13Q7L8C5 426 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 OR1J4Q8NGS1 313 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 FAM174AQ8TBP5 190 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 ASB17Q8WXJ9 295 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 ZNF587Q96SQ5 575 aaPredicted RBP16.15■□□□□ 0.18
VIM-206ENST00000487938 ZNF304Q9HCX3 659 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 SLC2A4RGQ9NR83 387 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 TAS2R4Q9NYW5 299 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 MTCH2Q9Y6C9 303 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 LOC100289279A0A1B0GTE1 492 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 A0A1W2PPL8 197 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 SLC17A2O00624 439 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 MT-ATP6P00846 226 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 FOLR1P15328 257 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 POU3F2P20265 443 aaPredicted RBP16.14■□□□□ 0.17
VIM-206ENST00000487938 FBLP22087 321 aaKnown RBP16.14■□□□□ 0.17
VIM-206ENST00000487938 CD27P26842 260 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 SCAND1P57086 179 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 TMEM225Q6GV28 225 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 C3P1Q6ZMU1 363 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 LANCL3Q6ZV70 420 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 SLC29A4Q7RTT9 530 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 C17orf82Q86X59 251 aaPredicted RBP16.14■□□□□ 0.17
VIM-206ENST00000487938 MUC20Q8N307 709 aaPredicted RBP16.14■□□□□ 0.17
VIM-206ENST00000487938 ASB5Q8WWX0 329 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 DAZLQ92904 295 aaKnown RBP16.14■□□□□ 0.17
VIM-206ENST00000487938 MSANTD3Q96H12 275 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 NPAS1Q99742 590 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 TAS2R8Q9NYW2 309 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 COPS7AQ9UBW8 275 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 CGGBP1Q9UFW8 167 aaPredicted RBP16.14■□□□□ 0.17
VIM-206ENST00000487938 LRP12Q9Y561 859 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 NUP210LQ5VU65 1888 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 IGHV3-20A0A0C4DH32 117 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 A0A1W2PQD3 144 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 UBE2QL1A1L167 161 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 HSPB2A8KAH6 182 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 SOX1O00570 391 aaPredicted RBP16.14■□□□□ 0.17
VIM-206ENST00000487938 PLPP3O14495 311 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 DXOO77932 396 aaKnown RBP16.14■□□□□ 0.17
VIM-206ENST00000487938 HSD11B2P80365 405 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 CFHR1Q03591 330 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 HSPB2Q16082 182 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 C14orf28Q4W4Y0 310 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 TMEM205Q6UW68 189 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 ZNF627Q7L945 461 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 GPR119Q8TDV5 335 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 DPYSL5Q9BPU6 564 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 LMAN1LQ9HAT1 526 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 ZNF224Q9NZL3 707 aa16.14■□□□□ 0.17
VIM-206ENST00000487938 VSX1Q9NZR4 365 aaPredicted RBP16.14■□□□□ 0.17
VIM-206ENST00000487938 ASXL3Q9C0F0 2248 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 FREM3P0C091 2139 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 DCDC2BA2VCK2 349 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 A8MVM7 634 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 GOSR2O14653 212 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 ARPC5O15511 151 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 NPIPB7O75200 414 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 TPPPO94811 219 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 AKAIN1P0CW23 69 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 RRASP10301 218 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 ZNF35P13682 527 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 CSF2RBP32927 897 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 RIDAP52758 137 aaKnown RBP16.13■□□□□ 0.17
VIM-206ENST00000487938 DHODHQ02127 395 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 COL19A1Q14993 1142 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 GLYATL3Q5SZD4 288 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 KCTD18Q6PI47 426 aaPredicted RBP16.13■□□□□ 0.17
VIM-206ENST00000487938 OR1N1Q8NGS0 311 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 MARVELD3Q96A59 401 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 VN1R1Q9GZP7 353 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 TMEM138Q9NPI0 162 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 COQ3Q9NZJ6 369 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 SDK1Q7Z5N4 2213 aa16.13■□□□□ 0.17
VIM-206ENST00000487938 METTL12A8MUP2 240 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 PNLIPRP2P54317 469 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 DLX5P56178 289 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 DCAF12L2Q5VW00 463 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 FAM166AQ6J272 317 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 FAM198BQ6UWH4 519 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 CATSPERDQ86XM0 798 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 OR51A2Q8NGJ7 313 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 SLC25A28Q96A46 364 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 DHRS9Q9BPW9 319 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 C1QTNF6Q9BXI9 259 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 ZMAT3Q9HA38 289 aaKnown RBP16.12■□□□□ 0.17
VIM-206ENST00000487938 EMC9Q9Y3B6 208 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 MRPS18BQ9Y676 258 aaKnown RBP16.12■□□□□ 0.17
VIM-206ENST00000487938 UNC13CQ8NB66 2214 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 LMO7DNF2Z398 122 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 TO15178 435 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 FADS1O60427 444 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms