RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 FAM107AO95990 144 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 SERPINE1P05121 402 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 C8GP07360 202 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 DCNP07585 359 aaKnown RBP3.25□□□□□ -1.89
PTCD3-216ENST00000487043 FGF4P08620 206 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 WNT2P09544 360 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 GFAPP14136 432 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 SERPINB5P36952 375 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 NOVA1P51513 510 aaKnown RBP3.25□□□□□ -1.89
PTCD3-216ENST00000487043 PLA2G16P53816 162 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 NAA20P61599 178 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 EWSR1Q01844 656 aaKnown RBP eCLIP3.25□□□□□ -1.89
PTCD3-216ENST00000487043 ACY1Q03154 408 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 STX3Q13277 289 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 TGFBIQ15582 683 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 TSNQ15631 228 aaKnown RBP3.25□□□□□ -1.89
PTCD3-216ENST00000487043 ZIC1Q15915 447 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 PPP1R3AQ16821 1122 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 CNPY1Q3B7I2 92 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 ZNF658BQ4V348 819 aaPredicted RBP3.25□□□□□ -1.89
PTCD3-216ENST00000487043 PYCR3Q53H96 274 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 CYBRD1Q53TN4 286 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 TMEM31Q5JXX7 168 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 ZNF678Q5SXM1 525 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 TTC23LQ6PF05 361 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 KCNIP4Q6PIL6 250 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 SBSNQ6UWP8 590 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 GCNT7Q6ZNI0 430 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 ZCCHC23Q6ZST2 131 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 ANKRD37Q7Z713 158 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 TMEM17Q86X19 198 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 CRLF3Q8IUI8 442 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 TRAPPC5Q8IUR0 188 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 SLC38A6Q8IZM9 456 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 ANKFN1Q8N957 763 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 OR56A4Q8NGH8 313 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 OR2L2Q8NH16 312 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 RFESDQ8TAC1 157 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 M1APQ8TC57 530 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 MCOLN3Q8TDD5 553 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 NPRL2Q8WTW4 380 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 TMEM159Q96B96 161 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 L3HYPDHQ96EM0 354 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 C11orf24Q96F05 449 aaPredicted RBP3.25□□□□□ -1.89
PTCD3-216ENST00000487043 POM121L2Q96KW2 1035 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 SECISBP2Q96T21 854 aaKnown RBP3.25□□□□□ -1.89
PTCD3-216ENST00000487043 SORT1Q99523 831 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 ZBTB18Q99592 522 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 OPRPNQ99935 248 aaPredicted RBP3.25□□□□□ -1.89
PTCD3-216ENST00000487043 TIMM29Q9BSF4 260 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 CHCHD5Q9BSY4 110 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 C20orf27Q9GZN8 174 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 NSRP1Q9H0G5 558 aaKnown RBP3.25□□□□□ -1.89
PTCD3-216ENST00000487043 PARVBQ9HBI1 364 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 RAB18Q9NP72 206 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 SLCO1B3Q9NPD5 702 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 FGFR1OP2Q9NVK5 253 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 DCAF16Q9NXF7 216 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 CD274Q9NZQ7 290 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 GNG12Q9UBI6 72 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 SLC23A2Q9UGH3 650 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 SPATA2Q9UM82 520 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 PDE10AQ9Y233 779 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 SLC17A4Q9Y2C5 497 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 WDR45Q9Y484 360 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 OARD1Q9Y530 152 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 EYSQ5T1H1 3165 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 NUMA1Q14980 2115 aa3.25□□□□□ -1.89
PTCD3-216ENST00000487043 SPTBN5Q9NRC6 3674 aaKnown RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 PRUNE2Q8WUY3 3088 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 SPTY2D1-AS1A0A0U1RR47 76 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 NCF1BA6NI72 391 aaPredicted RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 ZSCAN5BA6NJL1 495 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 RPL37AP8A6NKH3 93 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 NCF1CA8MVU1 366 aaPredicted RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 SUPT3HB4E1H0 165 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 NDUFAB1O14561 156 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 TAPBPO15533 448 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 ARHGEF9O43307 516 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 ZNF208O43345 1280 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 EFNA2O43921 213 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 SUPT3HO75486 399 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 LYPLA1O75608 230 aaPredicted RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 STK16O75716 305 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 SUPT7LO94864 414 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 C1orf105O95561 183 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 TNFP01375 233 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 IGKV3-20P01619 116 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 IGHG3P01860 377 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 OPN1LWP04000 364 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 CATP04040 527 aaKnown RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 IGF1P05019 195 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 HCKP08631 526 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 RPS17P08708 135 aaKnown RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 ANXA5P08758 320 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 TROVE2P10155 538 aaKnown RBP eCLIP3.24□□□□□ -1.894e-30■□□□□ 10.4
PTCD3-216ENST00000487043 TDGF1P13385 188 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 RPS2P15880 293 aaKnown RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 IDSP22304 550 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 TAGLN2P37802 199 aaKnown RBP3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms