RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 WDR45BQ5MNZ6 344 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 GUSBP11Q6P575 273 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 TMEM71Q6P5X7 295 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 ANKRD16Q6P6B7 361 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 KCTD18Q6PI47 426 aaPredicted RBP8.02□□□□□ -1.12
SYNE1-217ENST00000466159 LINC00346Q8IVM7 164 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 ZNF248Q8NDW4 579 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 OR8H1Q8NGG4 311 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 ASB5Q8WWX0 329 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 HGDQ93099 445 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 MED29Q9NX70 200 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 WNT16Q9UBV4 365 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 SRPK3Q9UPE1 567 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 TRIOBPQ9H2D6 2365 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 DMDP11532 3685 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 IGLV3-12A0A075B6K2 115 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 MEIS3P1A6NDR6 274 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 ANKUB1A6NFN9 424 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 GGT3PA6NGU5 568 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 G3V3Q6 166 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 H3BML4 177 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 TGM6O95932 706 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 DNASE1P24855 282 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 CRABP1P29762 137 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 SSTR2P30874 369 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 GNG2P59768 71 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 C17orf67Q0P5P2 114 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 SQSTM1Q13501 440 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 PCGF3Q3KNV8 242 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 LGALSLQ3ZCW2 172 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-217ENST00000466159 TMEM225Q6GV28 225 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 SEZ6L2Q6UXD5 910 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 DNM1P46Q6ZS02 220 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF767PQ75MW2 155 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 NLRC3Q7RTR2 1065 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 CATSPERDQ86XM0 798 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 OR2T35Q8NGX2 323 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 OR52N5Q8NH56 324 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 ASB10Q8WXI3 467 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 FAM3DQ96BQ1 224 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 SHDQ96IW2 340 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 CITED4Q96RK1 184 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF436Q9C0F3 470 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-217ENST00000466159 IRF2BPLQ9H1B7 796 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 FSCN3Q9NQT6 498 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 DHDHQ9UQ10 334 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 EMC9Q9Y3B6 208 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 MED12Q93074 2177 aa8.02□□□□□ -1.13
SYNE1-217ENST00000466159 TRAV18A0A075B6X5 111 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 TRBV11-1A0A0K0K1C0 115 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 A0A1B0GUH1 482 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 A0A1B0GVI7 797 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 A0A1W2PQM1 296 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 NPIPA5E9PKD4 350 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 ICMTO60725 284 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 ALOX12BO75342 701 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 RBBP9O75884 186 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 CXCL12P48061 93 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 ARRB1P49407 418 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 PER3P56645 1201 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 SCAND1P57086 179 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 ARPC4P59998 168 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 POU3F1Q03052 451 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 FOXF1Q12946 379 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 RAB11BQ15907 218 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 HYAL4Q2M3T9 481 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 METTL11BQ5VVY1 283 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 PTCRAQ6ISU1 281 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 PAPD4Q6PIY7 484 aaKnown RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 LRFN4Q6PJG9 635 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 CORO6Q6QEF8 472 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 TSSK4Q6SA08 328 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF782Q6ZMW2 699 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 DCXRQ7Z4W1 244 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 RABEPKQ7Z6M1 372 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 BPHLQ86WA6 291 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 MISPQ8IVT2 679 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 SLC26A10Q8NG04 563 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 OR4D10Q8NGI6 311 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 OR1J4Q8NGS1 313 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 C15orf40Q8WUR7 153 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 CHIAQ9BZP6 476 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 CDCP1Q9H5V8 836 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 NPDC1Q9NQX5 325 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 TAS2R4Q9NYW5 299 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 SCP2D1Q9UJQ7 156 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 NPIPA1Q9UND3 350 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 TMEM272A0A1B0GTI8 110 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 CIB4A0PJX0 185 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 H7C417 338 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 SLC17A2O00624 439 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 EFNA2O43921 213 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 PRAF2O60831 178 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 SRSF10O75494 262 aaKnown RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 SCRG1O75711 98 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 OPN1LWP04000 364 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF823P16415 610 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 TLE3Q04726 772 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 C19orf57Q0VDD7 668 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms