RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 TRIM64BA6NI03 449 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 SMAD7O15105 426 aaKnown RBP15.28■□□□□ 0.04
CPSF4-209ENST00000465132 SURF4O15260 269 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 WNT11O96014 354 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 NTF4P34130 210 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 CEACAM16Q2WEN9 425 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 BHLHA15Q7RTS1 189 aaPredicted RBP15.28■□□□□ 0.04
CPSF4-209ENST00000465132 DHRSXQ8N5I4 330 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 SETD9Q8NE22 299 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 OR8J1Q8NGP2 316 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 OR4Q3Q8NH05 313 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 MUCL1Q96DR8 90 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 BOD1Q96IK1 185 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 NMNAT3Q96T66 252 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 GSX2Q9BZM3 304 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 TOR3AQ9H497 397 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 NGBQ9NPG2 151 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 TVP23BQ9NYZ1 205 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 MOKQ9UQ07 419 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 GMPPBQ9Y5P6 360 aa15.28■□□□□ 0.04
CPSF4-209ENST00000465132 FREM1Q5H8C1 2179 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 SLC16A7O60669 478 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 THBDP07204 575 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 IGFBP1P08833 259 aaPredicted RBP15.27■□□□□ 0.04
CPSF4-209ENST00000465132 VHLP40337 213 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 PTDSS1P48651 473 aaKnown RBP15.27■□□□□ 0.04
CPSF4-209ENST00000465132 SLC25A1P53007 311 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 IL18R1Q13478 541 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 SNCBQ16143 134 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 ZIK1Q3SY52 487 aaPredicted RBP15.27■□□□□ 0.04
CPSF4-209ENST00000465132 ZNF627Q7L945 461 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.27■□□□□ 0.04
CPSF4-209ENST00000465132 PRIMA1Q86XR5 153 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 GLB1L2Q8IW92 636 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 ZNF433Q8N7K0 673 aaPredicted RBP15.27■□□□□ 0.04
CPSF4-209ENST00000465132 HSD17B8Q92506 261 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 FOXB1Q99853 325 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 RACGAP1Q9H0H5 632 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 SYT4Q9H2B2 425 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 FBXL3Q9UKT7 428 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 AMDHD2Q9Y303 409 aa15.27■□□□□ 0.04
CPSF4-209ENST00000465132 LOC100130705A0A1B0GUX0 176 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 H0YAE9 185 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 SLC16A6O15403 523 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 PRODHO43272 600 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 SNAP29O95721 258 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 OR8G3PP0DMU2 310 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 IGHV1-2P23083 117 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 PCSK6P29122 969 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 GGT2P36268 569 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 CDKN2AP42771 156 aaKnown RBP15.26■□□□□ 0.03
CPSF4-209ENST00000465132 PTH2RP49190 550 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 UBE2NP61088 152 aaKnown RBP15.26■□□□□ 0.03
CPSF4-209ENST00000465132 PCBD1P61457 104 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 MRPS34P82930 218 aaKnown RBP15.26■□□□□ 0.03
CPSF4-209ENST00000465132 RUNX1T1Q06455 604 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 TIMM23BQ5SRD1 257 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 LCN1P1Q5VSP4 162 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 MEDAGQ5VYS4 303 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 C12orf73Q69YU5 71 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 ACSM5Q6NUN0 579 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 LRFN4Q6PJG9 635 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 SLC25A47Q6Q0C1 308 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 STAC2Q6ZMT1 411 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 LSRQ86X29 649 aaPredicted RBP15.26■□□□□ 0.03
CPSF4-209ENST00000465132 IQCF1Q8N6M8 205 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 SLC37A3Q8NCC5 494 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 NPEPL1Q8NDH3 523 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 SDR9C7Q8NEX9 313 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 PROKR2Q8NFJ6 384 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 IGFBPL1Q8WX77 278 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 RFKQ969G6 155 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 OTULINQ96BN8 352 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 Q96MT0 163 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 MUS81Q96NY9 551 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 SIAEQ9HAT2 523 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 RPRD1BQ9NQG5 326 aaKnown RBP15.26■□□□□ 0.03
CPSF4-209ENST00000465132 FAM118AQ9NWS6 357 aa15.26■□□□□ 0.03
CPSF4-209ENST00000465132 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.25■□□□□ 0.03
CPSF4-209ENST00000465132 TMCC2O75069 709 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 LAP3P28838 519 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 ARF1P84077 181 aaKnown RBP15.25■□□□□ 0.03
CPSF4-209ENST00000465132 CRMP1Q14194 572 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 BEX5Q5H9J7 111 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 SLC35D3Q5M8T2 416 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 ZNF813Q6ZN06 617 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 PTCHD4Q6ZW05 846 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 ZBTB46Q86UZ6 589 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 GID4Q8IVV7 300 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 OR1K1Q8NGR3 316 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 FAM81AQ8TBF8 368 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 TMEM163Q8TC26 289 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 CYGBQ8WWM9 190 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 NMD3Q96D46 503 aaKnown RBP15.25■□□□□ 0.03
CPSF4-209ENST00000465132 NUAK2Q9H093 628 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 NELFAQ9H3P2 528 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 RERGLQ9H628 205 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 SEC61A2Q9H9S3 476 aa15.25■□□□□ 0.03
CPSF4-209ENST00000465132 SRA1Q9HD15 236 aaKnown RBP15.25■□□□□ 0.03
CPSF4-209ENST00000465132 KCNG2Q9UJ96 466 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms