RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 MTPNP58546 118 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 LCN2P80188 198 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 CYLC2Q14093 348 aaPredicted RBP11.29□□□□□ -0.6
HMGB3-204ENST00000448905 AGBL2Q5U5Z8 902 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 FAM27BQ5VT28 67 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 MBNL2Q5VZF2 373 aaKnown RBP11.29□□□□□ -0.6
HMGB3-204ENST00000448905 SHISA2Q6UWI4 295 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 KLHL36Q8N4N3 616 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 OR10A6Q8NH74 314 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 KLF14Q8TD94 323 aaPredicted RBP11.29□□□□□ -0.6
HMGB3-204ENST00000448905 TMEM239Q8WW34 195 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 ASB10Q8WXI3 467 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 MARS2Q96GW9 593 aaKnown RBP11.29□□□□□ -0.6
HMGB3-204ENST00000448905 POM121L2Q96KW2 1035 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 SEPHS2Q99611 448 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 SLC6A7Q99884 636 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 MEPEQ9NQ76 525 aaPredicted RBP11.29□□□□□ -0.6
HMGB3-204ENST00000448905 TUBG2Q9NRH3 451 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 MED31Q9Y3C7 131 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 DYSFO75923 2080 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 NPIPB13A6NJU9 1138 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 NPIPB4C9JG80 1138 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 H3BSA7 217 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 ZNF500O60304 480 aaPredicted RBP11.28□□□□□ -0.6
HMGB3-204ENST00000448905 UBOX5O94941 541 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 ADH4P08319 380 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 SBK2P0C263 348 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 THRBP10828 461 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 ZNF32P17041 273 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 ADRA2CP18825 462 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 MAKP20794 623 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 CDAP32320 146 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 PCGF2P35227 344 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 ZNF133P52736 654 aaPredicted RBP11.28□□□□□ -0.6
HMGB3-204ENST00000448905 PSG4Q00888 419 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 CD47Q08722 323 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 LAPTM4AQ15012 233 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 VMACQ2NL98 169 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 SPATA46Q5T0L3 261 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 ARMC4Q5T2S8 1044 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 CCDC80Q76M96 950 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 OR4D11Q8NGI4 311 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 SLC25A40Q8TBP6 338 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 LIPHQ8WWY8 451 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 NSMAFQ92636 917 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 C4orf45Q96LM5 186 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 ECSITQ9BQ95 431 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 PRSS27Q9BQR3 290 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 OR2J1Q9GZK6 312 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 TXNIPQ9H3M7 391 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 RIMS3Q9UJD0 308 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 CACNG2Q9Y698 323 aa11.28□□□□□ -0.6
HMGB3-204ENST00000448905 C12orf71A8MTZ7 269 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 SURF4O15260 269 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 TIMM8AO60220 97 aaPredicted RBP11.27□□□□□ -0.61
HMGB3-204ENST00000448905 OR5F1O95221 314 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 SLC2A10O95528 541 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 CST2P09228 141 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 TNFRSF1AP19438 455 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 GSTM3P21266 225 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 PPP1CBP62140 327 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 UBA52P62987 128 aaKnown RBP11.27□□□□□ -0.61
HMGB3-204ENST00000448905 TNFAIP6P98066 277 aaPredicted RBP11.27□□□□□ -0.61
HMGB3-204ENST00000448905 AWAT1Q58HT5 328 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 ALG10Q5BKT4 473 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 METTL21CQ5VZV1 264 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 SYT9Q86SS6 491 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 ZNF101Q8IZC7 436 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 SPICQ8N5J4 248 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 AKR7LQ8NHP1 331 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 ABHD4Q8TB40 342 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 STON2Q8WXE9 905 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 POP5Q969H6 163 aaKnown RBP11.27□□□□□ -0.61
HMGB3-204ENST00000448905 TAMM41Q96BW9 452 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 DCLRE1CQ96SD1 692 aaKnown RBP11.27□□□□□ -0.61
HMGB3-204ENST00000448905 WACQ9BTA9 647 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 ALG12Q9BV10 488 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 MRI1Q9BV20 369 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 ZNF747Q9BV97 191 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 ZMAT3Q9HA38 289 aaKnown RBP11.27□□□□□ -0.61
HMGB3-204ENST00000448905 MAN2C1Q9NTJ4 1040 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 MRGBPQ9NV56 204 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 KLHL21Q9UJP4 597 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 NUP50Q9UKX7 468 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 NPTNQ9Y639 398 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 AUP1Q9Y679 476 aa11.27□□□□□ -0.61
HMGB3-204ENST00000448905 LOC100509620A0A075B734 347 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 CD55P08174 381 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 MPV17P39210 176 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 WNT5AP41221 380 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 RPL27P61353 136 aaKnown RBP11.26□□□□□ -0.61
HMGB3-204ENST00000448905 ERVK-25P63136 954 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 PIN1Q13526 163 aaPredicted RBP11.26□□□□□ -0.61
HMGB3-204ENST00000448905 SELPLGQ14242 412 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 ARMCX4Q5H9R4 360 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 MTX3Q5HYI7 312 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 FAM205BPQ63HN1 556 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 ZNF771Q7L3S4 317 aaPredicted RBP11.26□□□□□ -0.61
HMGB3-204ENST00000448905 NKAIN4Q8IVV8 208 aa11.26□□□□□ -0.61
HMGB3-204ENST00000448905 ZDHHC22Q8N966 263 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms