RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TEX46H3BTG2 121 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 MAGEB4O15481 346 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 DHHO43323 396 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 CREBL2O60519 120 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 GABARAPO95166 117 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 SMIM18P0DKX4 95 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 RAC2P15153 192 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 CSF2RBP32927 897 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 CSRP3P50461 194 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 FOXL2P58012 376 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 ATXN7L3Q14CW9 347 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 UBE2NLQ5JXB2 153 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 SPERTQ8NA61 448 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 OR5M9Q8NGP3 310 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 TBC1D15Q8TC07 691 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 TOMM40LQ969M1 308 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 TMEM59Q9BXS4 323 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 LANCL2Q9NS86 450 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 KCNN3Q9UGI6 736 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 B9D1Q9UPM9 204 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 FNDC1Q4ZHG4 1894 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 VWA8A3KMH1 1905 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 TRGV8A0A0C4DH27 118 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 CSF1P09603 554 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 SPINK14Q6IE38 97 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 ARSKQ6UWY0 536 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 PHC2Q8IXK0 858 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 SLC22A24Q8N4F4 322 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 OR4Q3Q8NH05 313 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 LGALS14Q8TCE9 139 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 LIPHQ8WWY8 451 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 SLC35B4Q969S0 331 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 EXOSC3Q9NQT5 275 aaKnown RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 KCNG2Q9UJ96 466 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 PIGLQ9Y2B2 252 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 SPTBP11277 2137 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 SRMP19623 302 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF93P35789 620 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-213ENST00000448038 GABRA2P47869 451 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 VEGFCP49767 419 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 IDH3GP51553 393 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-213ENST00000448038 HMGA2P52926 109 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CLDN6P56747 220 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CD226Q15762 336 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF679Q8IYX0 411 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 C10orf111Q8N326 155 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF615Q8N8J6 731 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 BHLHE23Q8NDY6 225 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 PIGTQ969N2 578 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 SYT3Q9BQG1 590 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 PFDN2Q9UHV9 154 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 PCDHGA3Q9Y5H0 932 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 H7C417 338 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 IMPA2O14732 288 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 PTTG1O95997 202 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 FTH1P19P0C7X4 201 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 AKAIN1P0CW23 69 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 RGS19P49795 217 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 SEC61A1P61619 476 aaKnown RBP6.69□□□□□ -1.34
SYNE1-213ENST00000448038 ZXDCQ2QGD7 858 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-213ENST00000448038 C8orf82Q6P1X6 216 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-213ENST00000448038 GFRALQ6UXV0 394 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CCDC36Q8IYA8 594 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 PLPP7Q8NBV4 271 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 DNAAF1Q8NEP3 725 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 PSMF1Q92530 271 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 INTS12Q96CB8 462 aaKnown RBP6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CRLF2Q9HC73 371 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 MGAT4CQ9UBM8 478 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 REV1Q9UBZ9 1251 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 ING1Q9UK53 422 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CACNG2Q9Y698 323 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 M0R135 149 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CLEC2LP0C7M8 214 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CT45A8P0DMV1 189 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CT45A9P0DMV2 189 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CNR1P21554 472 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 ACHEP22303 614 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CD82P27701 267 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CDK10Q15131 360 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CT45A2Q5DJT8 189 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 GLYATL3Q5SZD4 288 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 HEPHL1Q6MZM0 1159 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 MDGA2Q7Z553 956 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 ZAR1Q86SH2 424 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 PARP16Q8N5Y8 322 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF431Q8TF32 576 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-213ENST00000448038 OIT3Q8WWZ8 545 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF799Q96GE5 643 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 ALKBH3Q96Q83 286 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-213ENST00000448038 PCDHB10Q9UN67 800 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 MN1Q10571 1320 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-213ENST00000448038 LOC107986453A0A1B0GWG9 222 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CNOT4O95628 575 aaKnown RBP6.69□□□□□ -1.34
SYNE1-213ENST00000448038 KNG1P01042 644 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 SRD5A2P31213 254 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 ARR3P36575 388 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 CCDC58Q4VC31 144 aa6.69□□□□□ -1.34
SYNE1-213ENST00000448038 DOK3Q7L591 496 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms