RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 TRAV1-2A0A0B4J238 106 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 DCDC2BA2VCK2 349 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 BLACEA4D250 179 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 UBL3O95164 117 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 ATF4P18848 351 aaPredicted RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 GALP22466 123 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 AP2S1P53680 142 aaPredicted RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 POLR2GP62487 172 aaKnown RBP eCLIP8.51□□□□□ -1.05
CUX1-206ENST00000437600 ADAM8P78325 824 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 ACY1Q03154 408 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 OR7A5Q15622 319 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 WDR38Q5JTN6 314 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 PAPD4Q6PIY7 484 aaKnown RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 TMEM205Q6UW68 189 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 SLC16A9Q7RTY1 509 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 FAM220AQ7Z4H9 259 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 EXD3Q8N9H8 876 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 CYYR1Q96J86 154 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 ZNF578Q96N58 590 aaPredicted RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 PELOQ9BRX2 385 aaKnown RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 CRB3Q9BUF7 120 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 SLC23A1Q9UHI7 598 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 LOC101059948A0A1B0GTJ6 334 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 FRG2CA6NGY1 282 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 SHOXO15266 292 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 SSNA1O43805 119 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 GATBO75879 557 aaKnown RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 GP1BBP13224 206 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 DPP4P27487 766 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 VEGFCP49767 419 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 BPIFB3P59826 476 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 RNF4P78317 190 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 DCDP81605 110 aaKnown RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 GGTLC2Q14390 218 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 Q6ZTK2 550 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 APCDD1LQ8NCL9 501 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 OR4D10Q8NGI6 311 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 TSEN15Q8WW01 171 aaKnown RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 SLC39A7Q92504 469 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 KCTD12Q96CX2 325 aaKnown RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 ZC3HAV1LQ96H79 300 aaKnown RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 INTS14Q96SY0 518 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 SEC22CQ9BRL7 303 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 PTDSS2Q9BVG9 487 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 DPAGT1Q9H3H5 408 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 CENPMQ9NSP4 180 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 MRPL22Q9NWU5 206 aaKnown RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 SEMA5BQ9P283 1151 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 PFDN2Q9UHV9 154 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 MGAT4AQ9UM21 535 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 FKBP7Q9Y680 259 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 ANXA2P2A6NMY6 339 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 TSPAN2O60636 221 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 KHDRBS3O75525 346 aaKnown RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 DHFRP00374 187 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 RENP00797 406 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 ANXA2P07355 339 aaKnown RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 EMP2P54851 167 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 MFGE8Q08431 387 aaPredicted RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 RIN1Q13671 783 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 TRAM1Q15629 374 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 RSPO4Q2I0M5 234 aaPredicted RBP8.51□□□□□ -1.05
CUX1-206ENST00000437600 Q499Y3 187 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 TMEM69Q5SWH9 247 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 BIVMQ86UB2 503 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 KMT5CQ86Y97 462 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 CREB3L1Q96BA8 519 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 DIABLOQ9NR28 239 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 SRPK3Q9UPE1 567 aa8.51□□□□□ -1.05
CUX1-206ENST00000437600 TRBV11-1A0A0K0K1C0 115 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 OR4C45A6NMZ5 311 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 BGLAPP02818 100 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 S100A6P06703 90 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 TACSTD2P09758 323 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 GAAP10253 952 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 CD59P13987 128 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 IFNGR1P15260 489 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 ANXA7P20073 488 aaKnown RBP8.5□□□□□ -1.05
CUX1-206ENST00000437600 KLK2P20151 261 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 KIR3DL2P43630 455 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 MMP15P51511 669 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 BLVRAP53004 296 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 TAGLNQ01995 201 aaKnown RBP8.5□□□□□ -1.05
CUX1-206ENST00000437600 MAB21L1Q13394 359 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 C1orf140Q5VVS0 124 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 UNQ9370/PRO34162Q6UXP9 181 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 ANKRD37Q7Z713 158 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 CDC20BQ86Y33 519 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 OR51A2Q8NGJ7 313 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 OR52B4Q8NGK2 314 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 NKD1Q969G9 470 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 INTS12Q96CB8 462 aaKnown RBP8.5□□□□□ -1.05
CUX1-206ENST00000437600 LAT2Q9GZY6 243 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 GHITMQ9H3K2 345 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 CGGBP1Q9UFW8 167 aaPredicted RBP8.5□□□□□ -1.05
CUX1-206ENST00000437600 D6RAR5 112 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 G3V3Y1 287 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 AIPO00170 330 aa8.5□□□□□ -1.05
CUX1-206ENST00000437600 LDOC1O95751 146 aaPredicted RBP8.5□□□□□ -1.05
CUX1-206ENST00000437600 ABHD16AO95870 558 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms