RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 LMX1AQ8TE12 382 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 RNF139Q8WU17 664 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 ASZ1Q8WWH4 475 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 TESCQ96BS2 214 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 SLC45A3Q96JT2 553 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 C4orf36Q96KX1 117 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 SERPINB11Q96P15 392 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 ALKBH3Q96Q83 286 aaPredicted RBP3.42□□□□□ -1.86
HMGB3-203ENST00000430118 ZBTB18Q99592 522 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 ZNF251Q9BRH9 671 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 PELOQ9BRX2 385 aaKnown RBP3.42□□□□□ -1.86
HMGB3-203ENST00000430118 GPR61Q9BZJ8 451 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 RPF2Q9H7B2 306 aaKnown RBP3.42□□□□□ -1.86
HMGB3-203ENST00000430118 GPN2Q9H9Y4 310 aaPredicted RBP3.42□□□□□ -1.86
HMGB3-203ENST00000430118 Q9HAA7 133 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 SLC25A19Q9HC21 320 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 MRPS30Q9NP92 439 aaKnown RBP3.42□□□□□ -1.86
HMGB3-203ENST00000430118 IFT46Q9NQC8 304 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 SMOXQ9NWM0 555 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 GPR83Q9NYM4 423 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 RDH8Q9NYR8 311 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 NKIRAS1Q9NYS0 192 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 GLTPQ9NZD2 209 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 GALPQ9UBC7 116 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 GAB2Q9UQC2 676 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 TP53TG5Q9Y2B4 290 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 AP4B1Q9Y6B7 739 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 LRRK1Q38SD2 2015 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 KNTC1P50748 2209 aa3.42□□□□□ -1.86
HMGB3-203ENST00000430118 IGHV3-20A0A0C4DH32 117 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 A0A0U1RQS6 177 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 SPTY2D1-AS1A0A0U1RR47 76 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 A0A1W2PNV4 684 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 TMEM120BA0PK00 339 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 LRRC30A6NM36 301 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 CENPXA8MT69 81 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 LEUTXA8MZ59 168 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 HSBP1L1C9JCN9 74 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 ANKRD63C9JTQ0 380 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 LOC110117498-PIK3R3F6TDL0 507 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 NPIPB9F8W1W9 429 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 H3BMQ9 156 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 H3BNH8 94 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 CASC3O15234 703 aaKnown RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 SLC31A1O15431 190 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 TRIM3O75382 744 aaPredicted RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 NXPH2O95156 264 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 CLDN1O95832 211 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 IFNA4P05014 189 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 GLAP06280 429 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 HOXD4P09016 255 aaPredicted RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 CTSEP14091 401 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 GNB3P16520 340 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 NCF2P19878 526 aaPredicted RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 TCN2P20062 427 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 TAC1P20366 129 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 CD40LGP29965 261 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 CSKP41240 450 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 SLCO1A2P46721 670 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 MEOX2P50222 304 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 ARHGDIAP52565 204 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 SUCLG1P53597 346 aaKnown RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 CDH4P55283 916 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 YWHAGP61981 247 aaKnown RBP eCLIP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 RPL36AP83881 106 aaKnown RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 DHODHQ02127 395 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 SRSF6Q13247 344 aaKnown RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 DOC2AQ14183 400 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 LINC01620Q4KN68 170 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 ZNF585BQ52M93 769 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 KLHL12Q53G59 568 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 CYBRD1Q53TN4 286 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 SAPCD1Q5SSQ6 148 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 THEM4Q5T1C6 240 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 RSBN1Q5VWQ0 802 aaPredicted RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 TIGD3Q6B0B8 471 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 FAM53AQ6NSI3 398 aaPredicted RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 C3orf33Q6P1S2 294 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 ZFP1Q6P2D0 407 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 C5orf46Q6UWT4 87 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 TRMT10CQ7L0Y3 403 aaKnown RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 ZFAND4Q86XD8 727 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 CATSPERDQ86XM0 798 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 GKN2Q86XP6 184 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 CDKL3Q8IVW4 592 aaPredicted RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 DCUN1D3Q8IWE4 304 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 CTAGE3PQ8IX95 158 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 UBL4BQ8N7F7 174 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 TTC29Q8NA56 475 aaPredicted RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 OR52H1Q8NGJ2 320 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 OR1K1Q8NGR3 316 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 TRMT10AQ8TBZ6 339 aaKnown RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 DTX3LQ8TDB6 740 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 RAB2BQ8WUD1 216 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 SPRYD4Q8WW59 207 aaPredicted RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 GTF3AQ92664 365 aaKnown RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 DLX4Q92988 240 aaPredicted RBP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.41□□□□□ -1.86
HMGB3-203ENST00000430118 DCUN1D1Q96GG9 259 aa3.41□□□□□ -1.86
HMGB3-203ENST00000430118 PAGE5Q96GU1 130 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms