RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 WDR38Q5JTN6 314 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 PAPD4Q6PIY7 484 aaKnown RBP9.67□□□□□ -0.86
USP54-204ENST00000422491 ZSCAN4Q8NAM6 433 aaPredicted RBP9.67□□□□□ -0.86
USP54-204ENST00000422491 OR4S1Q8NGB4 309 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 OR8D1Q8WZ84 308 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 ZNF775Q96BV0 537 aaPredicted RBP9.67□□□□□ -0.86
USP54-204ENST00000422491 SMIM8Q96KF7 97 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 LAT2Q9GZY6 243 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 HRH4Q9H3N8 390 aa9.67□□□□□ -0.86
USP54-204ENST00000422491 A0A087WUJ7 227 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 ELOA3DA6NLF2 546 aaPredicted RBP9.66□□□□□ -0.86
USP54-204ENST00000422491 DBX1A6NMT0 343 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 FAM157AC9JC47 383 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 RNASEK-C17orf49H0YIS7 233 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 CCL16O15467 120 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 IGHV2-5P01817 119 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 CSN2P05814 226 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 CD5P06127 495 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 FBP1P09467 338 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 CT62P0C5K7 136 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 ALOX5APP20292 161 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 TACR3P29371 465 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 CMPK1P30085 196 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 CCKBRP32239 447 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 ZNF157P51786 506 aaPredicted RBP9.66□□□□□ -0.86
USP54-204ENST00000422491 COL19A1Q14993 1142 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 NKPD1Q17RQ9 610 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 ELOA3BQ3SY89 546 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 DEFB134Q4QY38 66 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 ACER2Q5QJU3 275 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 CORO6Q6QEF8 472 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 ZNF561Q8N587 486 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 PLPP7Q8NBV4 271 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 ELOA3Q8NG57 546 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 TSEN15Q8WW01 171 aaKnown RBP9.66□□□□□ -0.86
USP54-204ENST00000422491 RSPRY1Q96DX4 576 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 ZC3H10Q96K80 434 aaKnown RBP9.66□□□□□ -0.86
USP54-204ENST00000422491 DCBLD2Q96PD2 775 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 GAL3ST1Q99999 423 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 ZMAT3Q9HA38 289 aaKnown RBP9.66□□□□□ -0.86
USP54-204ENST00000422491 WBP1LQ9NX94 342 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 LAMP5Q9UJQ1 280 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 KCNK6Q9Y257 313 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 RPH3AQ9Y2J0 694 aaPredicted RBP9.66□□□□□ -0.86
USP54-204ENST00000422491 HCFC2Q9Y5Z7 792 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 SLC22A7Q9Y694 548 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 TVP23AA6NH52 213 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 C9JQL5 133 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 H0YIZ8 118 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 MOSPD3O75425 235 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 NKX2-2O95096 273 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 SMIM10L1P0DMW3 83 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 MPZP25189 248 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 RPS27P42677 84 aaKnown RBP9.66□□□□□ -0.86
USP54-204ENST00000422491 SLC6A9P48067 706 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 PRPS1P60891 318 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 EGR3Q06889 387 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 MGAT2Q10469 447 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 MEF2DQ14814 521 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 PRICKLE4Q2TBC4 344 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 MOGAT2Q3SYC2 334 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 CD163Q86VB7 1156 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 JAZF1Q86VZ6 243 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 ZDHHC22Q8N966 263 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 OR4E2Q8NGC2 313 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 NUBPLQ8TB37 319 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 NT5CQ8TCD5 201 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 ADAMTS17Q8TE56 1095 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 SMARCD2Q92925 531 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 SAT2Q96F10 170 aaPredicted RBP9.66□□□□□ -0.86
USP54-204ENST00000422491 SMIM10Q96HG1 83 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 SERINC2Q96SA4 455 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 PRRT1Q99946 306 aa9.66□□□□□ -0.86
USP54-204ENST00000422491 PAPOLGQ9BWT3 736 aaKnown RBP9.66□□□□□ -0.86
USP54-204ENST00000422491 EIF1AYO14602 144 aaKnown RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 FGF17O60258 216 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 CLN5O75503 358 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 TLX1P31314 330 aaPredicted RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 EIF1AXP47813 144 aaKnown RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 PMPCAQ10713 525 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 ELAVL3Q14576 367 aaKnown RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 HNRNPA1L2Q32P51 320 aaKnown RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 FAHD2BQ6P2I3 314 aaPredicted RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 DBX2Q6ZNG2 339 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 TMPPEQ6ZT21 453 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 ZCCHC10Q8TBK6 192 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 SLC39A7Q92504 469 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 FAHD2AQ96GK7 314 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 SLC17A9Q9BYT1 436 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 LMAN2LQ9H0V9 348 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 WDR76Q9H967 626 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 ASH2LQ9UBL3 628 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 PCOLCE2Q9UKZ9 415 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 OR1A2Q9Y585 309 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 LOC100509620A0A075B734 347 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 MSGN1A6NI15 193 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 PRRT4C9JH25 899 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 LDLRAD4O15165 306 aa9.65□□□□□ -0.86
USP54-204ENST00000422491 DUS4LO95620 317 aaKnown RBP9.65□□□□□ -0.86
USP54-204ENST00000422491 IGKV1D-16P01601 117 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms