RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 GAAP10253 952 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 HCCSP53701 268 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 SIRPAP78324 504 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 LY6DQ14210 128 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 EIF2B1Q14232 305 aaKnown RBP15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 MEP1BQ16820 701 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 PRR30Q53SZ7 412 aaPredicted RBP15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 PHYHD1Q5SRE7 291 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 OR2G6Q5TZ20 316 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 ZNF322Q6U7Q0 402 aaPredicted RBP15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 GCNT2Q8N0V5 402 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 CNEP1R1Q8N9A8 125 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 OR2AJ1Q8NGZ0 328 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 CPT1CQ8TCG5 803 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 ASB17Q8WXJ9 295 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 C11orf40Q8WZ69 217 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 TTYH2Q9BSA4 534 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 TP63Q9H3D4 680 aaPredicted RBP15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 CRLF2Q9HC73 371 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 MRPL22Q9NWU5 206 aaKnown RBP15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 IKZF2Q9UKS7 526 aa15.14■□□□□ 0.01
CCDC28B-202ENST00000421922 PRRC2CQ9Y520 2896 aaKnown RBP15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 DOCK7Q96N67 2140 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 ARHGAP21Q5T5U3 1957 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 SMIM31A0A1B0GVY4 71 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 DPPA5A6NC42 116 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 J3QLW9 94 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 MPZL1O95297 269 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 EDN3P14138 238 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 ZNF19P17023 458 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 MSR1P21757 451 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 ZNF133P52736 654 aaPredicted RBP15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 ROR2Q01974 943 aaKnown RBP15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 ZNF85Q03923 595 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 EIF2S3LQ2VIR3 472 aaKnown RBP15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 ARMCX4Q5H9R4 360 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 SYT6Q5T7P8 510 aaPredicted RBP15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 TSPO2Q5TGU0 170 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 KCTD18Q6PI47 426 aaPredicted RBP15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 PLEKHG7Q6ZR37 379 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 OTOSQ8NHW6 89 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 SPRYD4Q8WW59 207 aaPredicted RBP15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 GATAD2BQ8WXI9 593 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 COG8Q96MW5 612 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 OR5M11Q96RB7 305 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 MGLLQ99685 303 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 NELFAQ9H3P2 528 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 GPR35Q9HC97 309 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 TRIM36Q9NQ86 728 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 POLE4Q9NR33 117 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 GNG8Q9UK08 70 aa15.13■□□□□ 0.01
CCDC28B-202ENST00000421922 SPTA1P02549 2419 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 IL2RAP01589 272 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 IGHV3-9P01782 118 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 KRT8P05787 483 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 TACSTD2P09758 323 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 NPR2P20594 1047 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 CDAP32320 146 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 RPS27P42677 84 aaKnown RBP15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 GP2P55259 537 aaKnown RBP15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 CEACAM16Q2WEN9 425 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 FAM214BQ7L5A3 538 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 NUFIP2Q7Z417 695 aaKnown RBP15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 C9orf106Q8NAJ2 232 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 OR13F1Q8NGS4 319 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 TMIGD2Q96BF3 282 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 C4orf36Q96KX1 117 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 KCNN2Q9H2S1 579 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 EMC7Q9NPA0 242 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 COPS3Q9UNS2 423 aa15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 LSM2Q9Y333 95 aaKnown RBP15.12■□□□□ 0.01
CCDC28B-202ENST00000421922 MBD3L4A6NDZ8 208 aaPredicted RBP15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 MBD3L3A6NE82 208 aaPredicted RBP15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 MBD3L5A6NJ08 208 aaPredicted RBP15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 SLC19A2O60779 497 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 SEC14L2O76054 403 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 FARS2O95363 451 aaKnown RBP15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 NTF4P34130 210 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 GBX2P52951 348 aaPredicted RBP15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 CASP6P55212 293 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 TAS2R43P59537 309 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 MLLT11Q13015 90 aaPredicted RBP15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 STK11Q15831 433 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 TSTQ16762 297 aaKnown RBP15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 TP53I3Q53FA7 332 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 TEX30Q5JUR7 227 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 OTPQ5XKR4 325 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 CLVS1Q8IUQ0 354 aaPredicted RBP15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 LINC00346Q8IVM7 164 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 SYS1Q8N2H4 156 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 YIPF7Q8N8F6 280 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 OR6K3Q8NGY3 331 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 MBD3L2Q8NHZ7 208 aaPredicted RBP15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 UFD1Q92890 307 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 ZFP3Q96NJ6 502 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 FAM192AQ9GZU8 254 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 SLC7A10Q9NS82 523 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 UGT2A1Q9Y4X1 527 aa15.11■□□□□ 0.01
CCDC28B-202ENST00000421922 PHF3Q92576 2039 aaKnown RBP15.1■□□□□ 0.01
CCDC28B-202ENST00000421922 TMIGD3P0DMS9 266 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms