RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 KCNS3Q9BQ31 491 aa10.84□□□□□ -0.67
SKA1-203ENST00000417656 RNF121Q9H920 327 aa10.84□□□□□ -0.67
SKA1-203ENST00000417656 SIAEQ9HAT2 523 aa10.84□□□□□ -0.67
SKA1-203ENST00000417656 PAPOLBQ9NRJ5 636 aaKnown RBP10.84□□□□□ -0.67
SKA1-203ENST00000417656 OAZ3Q9UMX2 235 aa10.84□□□□□ -0.67
SKA1-203ENST00000417656 BAIAP2Q9UQB8 552 aa10.84□□□□□ -0.67
SKA1-203ENST00000417656 COA3Q9Y2R0 106 aaPredicted RBP10.84□□□□□ -0.67
SKA1-203ENST00000417656 CSMD2Q7Z408 3487 aa10.83□□□□□ -0.67
SKA1-203ENST00000417656 LRBAP50851 2863 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 IGLV1-36A0A0B4J1U3 117 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 IGHV2OR16-5A0A0B4J2B6 119 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 ANKRD65E5RJM6 399 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 MITFO75030 526 aaPredicted RBP10.83□□□□□ -0.68
SKA1-203ENST00000417656 ATE1O95260 518 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 MPZL1O95297 269 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 CRYAAP02489 173 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 MMP7P09237 267 aaPredicted RBP10.83□□□□□ -0.68
SKA1-203ENST00000417656 GAAP10253 952 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 ZNF14P17017 642 aaPredicted RBP10.83□□□□□ -0.68
SKA1-203ENST00000417656 ZNF32P17041 273 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 CRABP1P29762 137 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 GRK5P34947 590 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 CENPAP49450 140 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 KEAP1Q14145 624 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 CRMP1Q14194 572 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 ENDOGQ14249 297 aaKnown RBP10.83□□□□□ -0.68
SKA1-203ENST00000417656 DNM1P34Q6PK57 102 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 UGT2A3Q6UWM9 527 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 C20orf204Q6ZNR8 217 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 DPPA2Q7Z7J5 298 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.83□□□□□ -0.68
SKA1-203ENST00000417656 ZDHHC13Q8IUH4 622 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 ZNF584Q8IVC4 421 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 GLB1L2Q8IW92 636 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 OR6V1Q8N148 313 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 SVOPLQ8N434 492 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 SLC37A3Q8NCC5 494 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 NPEPL1Q8NDH3 523 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 OR9Q1Q8NGQ5 310 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 DNAJC9Q8WXX5 260 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 FBXW5Q969U6 566 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 CENPNQ96H22 339 aaPredicted RBP10.83□□□□□ -0.68
SKA1-203ENST00000417656 ZNF416Q9BWM5 594 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 RACGAP1Q9H0H5 632 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 S100A14Q9HCY8 104 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 CCNB1IP1Q9NPC3 277 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 ATP23Q9Y6H3 246 aa10.83□□□□□ -0.68
SKA1-203ENST00000417656 ERICH4A6NGS2 130 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 RIIAD1A6NNX1 92 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 FAM171A2A8MVW0 826 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 E7EQL1 145 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 MGRN1O60291 552 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 CST2P09228 141 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 CD53P19397 219 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 DNASE1P24855 282 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 PYCR1P32322 319 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 GUCA1AP43080 201 aaPredicted RBP10.82□□□□□ -0.68
SKA1-203ENST00000417656 HSF2Q03933 536 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 GINS1Q14691 196 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 PABPC1L2AQ5JQF8 200 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 ZNF362Q5T0B9 420 aaPredicted RBP10.82□□□□□ -0.68
SKA1-203ENST00000417656 FAM27BQ5VT28 67 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 SLC27A4Q6P1M0 643 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 DEPDC4Q8N2C3 294 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 PARP8Q8N3A8 854 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 ZNF611Q8N823 705 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 AKR7LQ8NHP1 331 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 C11orf40Q8WZ69 217 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 CCL19Q99731 98 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 KCNN2Q9H2S1 579 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 SRA1Q9HD15 236 aaKnown RBP10.82□□□□□ -0.68
SKA1-203ENST00000417656 CMC2Q9NRP2 79 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 KRT84Q9NSB2 600 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 CISD1Q9NZ45 108 aaKnown RBP10.82□□□□□ -0.68
SKA1-203ENST00000417656 KLHL21Q9UJP4 597 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 FBXL3Q9UKT7 428 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 B9D1Q9UPM9 204 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 FKBP7Q9Y680 259 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 ROS1P08922 2347 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 SPG11Q96JI7 2443 aa10.82□□□□□ -0.68
SKA1-203ENST00000417656 HEATR1Q9H583 2144 aaKnown RBP10.81□□□□□ -0.68
SKA1-203ENST00000417656 IFNGP01579 166 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 SERPINA5P05154 406 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 GYPBP06028 91 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 SOD3P08294 240 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 ZNF3P17036 446 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 IGFBP5P24593 272 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 MEP1BQ16820 701 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 TMEM236Q5W0B7 351 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 ACSM5Q6NUN0 579 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 ZBTB46Q86UZ6 589 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 SLC30A7Q8NEW0 376 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 PROKR2Q8NFJ6 384 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 SLC26A10Q8NG04 563 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 OR2T4Q8NH00 348 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 NINJ1Q92982 152 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 DDOQ99489 341 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 CIB1Q99828 191 aa10.81□□□□□ -0.68
SKA1-203ENST00000417656 RBM4Q9BWF3 364 aaKnown RBP10.81□□□□□ -0.68
SKA1-203ENST00000417656 OR2H1Q9GZK4 316 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms