RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 NELFAQ9H3P2 528 aa12.54□□□□□ -0.4
SF3B1-204ENST00000414963 WDR76Q9H967 626 aa12.54□□□□□ -0.4
SF3B1-204ENST00000414963 COMMD3-BMI1R4GMX3 469 aa12.54□□□□□ -0.4
SF3B1-204ENST00000414963 A0A087WXM4 84 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 A0A1W2PPL8 197 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 ZNF593O00488 134 aaPredicted RBP12.53□□□□□ -0.4
SF3B1-204ENST00000414963 MSTNO14793 375 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 HLA-DQA2P01906 255 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 ADRA2AP08913 450 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 ZNF823P16415 610 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 MSR1P21757 451 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 C21orf33P30042 268 aaPredicted RBP12.53□□□□□ -0.4
SF3B1-204ENST00000414963 CDAP32320 146 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 ENTPD1P49961 510 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 ARF1P84077 181 aaKnown RBP12.53□□□□□ -0.4
SF3B1-204ENST00000414963 MVKQ03426 396 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 TLE1Q04724 770 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 PIGFQ07326 219 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 P2RY6Q15077 328 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 SHFQ7M4L6 423 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 CDC20BQ86Y33 519 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 ERI1Q8IV48 349 aaKnown RBP12.53□□□□□ -0.4
SF3B1-204ENST00000414963 SLC35F2Q8IXU6 374 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 GABRG1Q8N1C3 465 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 ZNF843Q8N446 348 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 ZNF454Q8N9F8 522 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 ZNF610Q8N9Z0 462 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 FOXN4Q96NZ1 517 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 FOXB1Q99853 325 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 ZNF649Q9BS31 505 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 WACQ9BTA9 647 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 SEC61A2Q9H9S3 476 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 CYB5R1Q9UHQ9 305 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 EXOSC1Q9Y3B2 195 aaKnown RBP12.53□□□□□ -0.4
SF3B1-204ENST00000414963 TMEM14AQ9Y6G1 99 aa12.53□□□□□ -0.4
SF3B1-204ENST00000414963 ARHGAP21Q5T5U3 1957 aa12.52□□□□□ -0.4
SF3B1-204ENST00000414963 A0A1B0GUH1 482 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 CCL21O00585 134 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 TMCC2O75069 709 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 APOL3O95236 402 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 ITGA5P08648 1049 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 MRPL3P09001 348 aaKnown RBP12.52□□□□□ -0.41
SF3B1-204ENST00000414963 CST2P09228 141 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 ALOX5APP20292 161 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 COX5AP20674 150 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 NAA10P41227 235 aaPredicted RBP12.52□□□□□ -0.41
SF3B1-204ENST00000414963 CDH15P55291 814 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 FOXG1P55316 489 aaPredicted RBP12.52□□□□□ -0.41
SF3B1-204ENST00000414963 TUBA4AP68366 448 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 ADAM8P78325 824 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 SOWAHCQ53LP3 525 aaPredicted RBP12.52□□□□□ -0.41
SF3B1-204ENST00000414963 BEND4Q6ZU67 534 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 SPARTQ8N0X7 666 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 SLC22A24Q8N4F4 322 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 OTOSQ8NHW6 89 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 ERVK13-1Q9NX77 482 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 TAS2R16Q9NYV7 291 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 JKAMPQ9P055 326 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 SH3BGRL2Q9UJC5 107 aa12.52□□□□□ -0.41
SF3B1-204ENST00000414963 PHF3Q92576 2039 aaKnown RBP12.52□□□□□ -0.41
SF3B1-204ENST00000414963 A0A1W2PQL4 384 aaPredicted RBP12.51□□□□□ -0.41
SF3B1-204ENST00000414963 C12orf71A8MTZ7 269 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 A8MXE2 369 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 C1QL1O75973 258 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 MT-ND2P03891 347 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 LIMS3P0CW19 117 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 LIMS4P0CW20 117 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 SMIM18P0DKX4 95 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 OR8G3PP0DMU2 310 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 HOXB1P14653 301 aaPredicted RBP12.51□□□□□ -0.41
SF3B1-204ENST00000414963 MYL12AP19105 171 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 IGHV1-2P23083 117 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 ETV1P50549 477 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 HIST1H3AP68431 136 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 TGFBR3Q03167 851 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 ENDOGQ14249 297 aaKnown RBP12.51□□□□□ -0.41
SF3B1-204ENST00000414963 GALEQ14376 348 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 SGCAQ16586 387 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 MEP1BQ16820 701 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 HIST2H3PS2Q5TEC6 136 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 SLC18B1Q6NT16 456 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 ANKRD16Q6P6B7 361 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 ZNF474Q6S9Z5 364 aaPredicted RBP12.51□□□□□ -0.41
SF3B1-204ENST00000414963 HIST2H3AQ71DI3 136 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 DPY19L4Q7Z388 723 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 MRGPRGQ86SM5 289 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 SYT9Q86SS6 491 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 SVOPQ8N4V2 548 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 ZNF433Q8N7K0 673 aaPredicted RBP12.51□□□□□ -0.41
SF3B1-204ENST00000414963 C1orf162Q8NEQ5 155 aaPredicted RBP12.51□□□□□ -0.41
SF3B1-204ENST00000414963 OR10H4Q8NGA5 316 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 OR10H5Q8NGA6 315 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 OR6N2Q8NGY6 317 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 ASB17Q8WXJ9 295 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 BCL2L2Q92843 193 aaPredicted RBP12.51□□□□□ -0.41
SF3B1-204ENST00000414963 MYCBPQ99417 103 aaPredicted RBP12.51□□□□□ -0.41
SF3B1-204ENST00000414963 OPN3Q9H1Y3 402 aaPredicted RBP12.51□□□□□ -0.41
SF3B1-204ENST00000414963 EMC7Q9NPA0 242 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 LHFPL6Q9Y693 200 aa12.51□□□□□ -0.41
SF3B1-204ENST00000414963 TMEM129A0AVI4 362 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms