RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 LCN10Q6JVE6 187 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 KIRREL2Q6UWL6 708 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 DLL4Q9NR61 685 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 MMP24Q9Y5R2 645 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 C4orf47A7E2U8 309 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 CTNSO60931 367 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 LILRB5O75023 590 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 SERPINA5P05154 406 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 MAPK3P27361 379 aaPredicted RBP10.89□□□□□ -0.67
HMGB1-206ENST00000405805 PPP2CBP62714 309 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 PPP2CAP67775 309 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 CXADRP78310 365 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 DPTQ07507 201 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 UBE2NLQ5JXB2 153 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 RHOUQ7L0Q8 258 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 GPAT4Q86UL3 456 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 PPP1R14AQ96A00 147 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 ZNF707Q96C28 371 aaPredicted RBP10.89□□□□□ -0.67
HMGB1-206ENST00000405805 RSPO3Q9BXY4 272 aaPredicted RBP10.89□□□□□ -0.67
HMGB1-206ENST00000405805 PYCARD-AS1I3L0S3 204 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 PRAF2O60831 178 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 TBX6O95947 436 aaPredicted RBP10.89□□□□□ -0.67
HMGB1-206ENST00000405805 ADH1BP00325 375 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 CISD3P0C7P0 127 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 SPI1P17947 270 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 AKT2P31751 481 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 FRKP42685 505 aaPredicted RBP10.89□□□□□ -0.67
HMGB1-206ENST00000405805 OR1D4P47884 311 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 GSG1Q2KHT4 349 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 HFEQ30201 348 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 EOGTQ5NDL2 527 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 PARM1Q6UWI2 310 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 SLC16A9Q7RTY1 509 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 TMPRSS5Q9H3S3 457 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 SLC22A13Q9Y226 551 aa10.89□□□□□ -0.67
HMGB1-206ENST00000405805 TRIOBPQ9H2D6 2365 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 IFITM5A6NNB3 132 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 TMEM127O75204 238 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 ZFPL1O95159 310 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 IFNA2P01563 188 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 ZGLP1P0C6A0 271 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 TPT1P13693 172 aaKnown RBP10.88□□□□□ -0.67
HMGB1-206ENST00000405805 DAOP14920 347 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 HHEXQ03014 270 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 OR7A5Q15622 319 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 RAB11BQ15907 218 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 ATRAIDQ6UW56 229 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 TGIF2LXQ8IUE1 241 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 ZNF584Q8IVC4 421 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 ARL6IP6Q8N6S5 226 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 BVESQ8NE79 360 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 OR4C3Q8NH37 302 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 GPR148Q8TDV2 347 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 FRZBQ92765 325 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 HHIPQ96QV1 700 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 TRPM7Q96QT4 1865 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 OR2T1O43869 369 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 CT62P0C5K7 136 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 TMIGD3P0DMS9 266 aaPredicted RBP10.88□□□□□ -0.67
HMGB1-206ENST00000405805 RNH1P13489 461 aaKnown RBP10.88□□□□□ -0.67
HMGB1-206ENST00000405805 ADH6P28332 368 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 PPP1CAP62136 330 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 MELKQ14680 651 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 ARHGAP11BQ3KRB8 267 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 CARD17Q5XLA6 110 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 B3GNTL1Q67FW5 361 aaPredicted RBP10.88□□□□□ -0.67
HMGB1-206ENST00000405805 Q6ZSR6 202 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 GLB1L2Q8IW92 636 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 FAM24BQ8N5W8 94 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 KDF1Q8NAX2 398 aaPredicted RBP10.88□□□□□ -0.67
HMGB1-206ENST00000405805 INTS12Q96CB8 462 aaKnown RBP10.88□□□□□ -0.67
HMGB1-206ENST00000405805 ARHGDIGQ99819 225 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 FAM96BQ9Y3D0 163 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 PATJQ8NI35 1801 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 HEATR5BQ9P2D3 2071 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 CXorf65A6NEN9 183 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 MFSD2BA6NFX1 497 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 TMEM150CB9EJG8 249 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 LINC01387J3KSC0 135 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 JMJD7P0C870 316 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 IGFALSP35858 605 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 POU3F4P49335 361 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 TNK1Q13470 666 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 TMEM52BQ4KMG9 183 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 VN1R4Q7Z5H5 301 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 FAM219AQ8IW50 185 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 SMIM19Q96E16 107 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 ATG101Q9BSB4 218 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 ADGRL4Q9HBW9 690 aa10.88□□□□□ -0.67
HMGB1-206ENST00000405805 ELF5Q9UKW6 265 aaPredicted RBP10.88□□□□□ -0.67
HMGB1-206ENST00000405805 TPRP12270 2363 aaKnown RBP10.88□□□□□ -0.67
HMGB1-206ENST00000405805 H3BML4 177 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 SNAPC5O75971 98 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 MEP1BQ16820 701 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 RNASE10Q5GAN6 216 aaKnown RBP10.87□□□□□ -0.67
HMGB1-206ENST00000405805 FAM69AQ5T7M9 428 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 LAMTOR1Q6IAA8 161 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 C19orf48Q6RUI8 117 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 SSX7Q7RTT5 188 aa10.87□□□□□ -0.67
HMGB1-206ENST00000405805 RNF113BQ8IZP6 322 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms