RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 GSKIPQ9P0R6 139 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 KCNE5Q9UJ90 142 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 ZNF223Q9UK11 482 aaPredicted RBP12.56□□□□□ -0.4
SDC1-202ENST00000381150 NGFRP08138 427 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 NQO2P16083 231 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 SPI1P17947 270 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 CMPK1P30085 196 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 CALCRP30988 508 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 HAAOP46952 286 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 MRPS10P82664 201 aaKnown RBP12.56□□□□□ -0.4
SDC1-202ENST00000381150 ELAVL1Q15717 326 aaKnown RBP12.56□□□□□ -0.4
SDC1-202ENST00000381150 EIF2S3LQ2VIR3 472 aaKnown RBP12.56□□□□□ -0.4
SDC1-202ENST00000381150 ADAM5Q6NVV9 412 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 FBXO42Q6P3S6 717 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 EIF4E3Q8N5X7 224 aaKnown RBP12.56□□□□□ -0.4
SDC1-202ENST00000381150 ZNF615Q8N8J6 731 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 CCL4L1Q8NHW4 92 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 COMMD4Q9H0A8 199 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 CLEC1BQ9P126 229 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 GHRLQ9UBU3 117 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 PCOLCE2Q9UKZ9 415 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 WDFY3Q8IZQ1 3526 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 TMEM235A6NFC5 223 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 H0Y8X5 98 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 SULT1B1O43704 296 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 ADAM11O75078 769 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 NME2P22392 152 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 CD80P33681 288 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 SRSF5Q13243 272 aaKnown RBP12.56□□□□□ -0.4
SDC1-202ENST00000381150 C2orf76Q3KRA6 126 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 FAM76BQ5HYJ3 339 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 PRAMEF8Q5VWM4 474 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 PRAMEF7Q5VXH5 474 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 ZNF585AQ6P3V2 769 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 SLC29A4Q7RTT9 530 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 SLC35F3Q8IY50 421 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 ZNF619Q8N2I2 560 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 ACBD4Q8NC06 268 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 BMFQ96LC9 184 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 OR2M4Q96R27 311 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 NKX2-4Q9H2Z4 354 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 TAS2R8Q9NYW2 309 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 COLEC10Q9Y6Z7 277 aa12.56□□□□□ -0.4
SDC1-202ENST00000381150 SEC16AO15027 2179 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 ZNF736B4DX44 427 aaPredicted RBP12.55□□□□□ -0.4
SDC1-202ENST00000381150 XRCC3O43542 346 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 DBIP07108 87 aaKnown RBP12.55□□□□□ -0.4
SDC1-202ENST00000381150 SDHAP31040 664 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 CASRP41180 1078 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 LY6G6FQ5SQ64 297 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 TM4SF19Q96DZ7 209 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 HEBP2Q9Y5Z4 205 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 A6NCN8 305 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 GPRIN2O60269 458 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 CTAG2O75638 210 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 SMIM10L1P0DMW3 83 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 NID1P14543 1247 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 CEBPGP53567 150 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 IL10RAQ13651 578 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 RPL13AP3Q6NVV1 102 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 ACOT7LQ6ZUV0 252 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 EID2Q8N6I1 236 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 SMIM10Q96HG1 83 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 JAM3Q9BX67 310 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 SYT4Q9H2B2 425 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 KLHDC2Q9Y2U9 406 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 CSAG2Q9Y5P2 127 aa12.55□□□□□ -0.4
SDC1-202ENST00000381150 PI3P19957 117 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 SLC2A5P22732 501 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 MAP3K8P41279 467 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 DLX2Q07687 328 aaPredicted RBP12.54□□□□□ -0.4
SDC1-202ENST00000381150 GFOD2Q3B7J2 385 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 OR52W1Q6IF63 320 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 OR2L13Q8N349 312 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 KCNRGQ8N5I3 272 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 OR4N2Q8NGD1 307 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 MRPL38Q96DV4 380 aaKnown RBP12.54□□□□□ -0.4
SDC1-202ENST00000381150 ELF4Q99607 663 aaPredicted RBP12.54□□□□□ -0.4
SDC1-202ENST00000381150 MKKSQ9NPJ1 570 aaPredicted RBP12.54□□□□□ -0.4
SDC1-202ENST00000381150 FRRS1LQ9P0K9 344 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 PMS2P2O95744 297 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 TACSTD2P09758 323 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 ID4P47928 161 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 EMDP50402 254 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 S100A10P60903 97 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 EEF1A1P68104 462 aaKnown RBP12.54□□□□□ -0.4
SDC1-202ENST00000381150 S100A12P80511 92 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 NR0B2Q15466 257 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 RNF113BQ8IZP6 322 aaKnown RBP12.54□□□□□ -0.4
SDC1-202ENST00000381150 SYS1Q8N2H4 156 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 LCN9Q8WX39 176 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 ROBO4Q8WZ75 1007 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 FAM3DQ96BQ1 224 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 CLCC1Q96S66 551 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 PFDN5Q99471 154 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 BARX1Q9HBU1 254 aaPredicted RBP12.54□□□□□ -0.4
SDC1-202ENST00000381150 FLRT3Q9NZU0 649 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 SLC22A13Q9Y226 551 aa12.54□□□□□ -0.4
SDC1-202ENST00000381150 MEX3AA1L020 520 aaKnown RBP12.54□□□□□ -0.4
SDC1-202ENST00000381150 HOXB2P14652 356 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms