RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 DCBLD2Q96PD2 775 aa10.48□□□□□ -0.73
PTPRF-203ENST00000372407 OR6C1Q96RD1 312 aa10.48□□□□□ -0.73
PTPRF-203ENST00000372407 SLC39A9Q9NUM3 307 aa10.48□□□□□ -0.73
PTPRF-203ENST00000372407 ACOXLQ9NUZ1 547 aa10.48□□□□□ -0.73
PTPRF-203ENST00000372407 NOSIPQ9Y314 301 aaKnown RBP10.48□□□□□ -0.73
PTPRF-203ENST00000372407 ARFGEF1Q9Y6D6 1849 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 GIPP09681 153 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 CD22P20273 847 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 BCKDHBP21953 392 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 EVX1P49640 407 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 RAB5CP51148 216 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 ATPAF1Q5TC12 328 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 LIPHQ8WWY8 451 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 ASB16Q96NS5 453 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 CHST2Q9Y4C5 530 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 PTGER4P35408 488 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 RACK1P63244 317 aaKnown RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 SSX2Q16385 188 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 SHEQ5VZ18 495 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 ANKRD9Q96BM1 317 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 CSF3RQ99062 836 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 ARRDC5A6NEK1 342 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 PHF1O43189 567 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 B4GALT3O60512 393 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 ALX3O95076 343 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 APEHP13798 732 aaKnown RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 POU3F3P20264 500 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 NPY4RP50391 375 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 GRB2P62993 217 aaKnown RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 BDH1Q02338 343 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 GLYR1Q49A26 553 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 YOD1Q5VVQ6 348 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 OGFOD3Q6PK18 319 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 ZNF808Q8N4W9 903 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 TERB2Q8NHR7 220 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 MAFAQ8NHW3 353 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-203ENST00000372407 PIGQQ9BRB3 760 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 NIPSNAP3BQ9BS92 247 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 ZNF416Q9BWM5 594 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 NTNG1Q9Y2I2 539 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 PCDHGA5Q9Y5G8 931 aa10.47□□□□□ -0.73
PTPRF-203ENST00000372407 A0A1B0GX78 115 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 G3V3Y1 287 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 M0R082 166 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 PMP2P02689 132 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 SLC2A1P11166 492 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 ENPP1P22413 925 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 FKBP2P26885 142 aaKnown RBP10.46□□□□□ -0.73
PTPRF-203ENST00000372407 GABRA2P47869 451 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 CARD18P57730 90 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 CLINT1Q14677 625 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 BATFQ16520 125 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 BRICD5Q6PL45 260 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 PIGTQ969N2 578 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 WBP2Q969T9 261 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 BTF3L4Q96K17 158 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 UTP23Q9BRU9 249 aaKnown RBP10.46□□□□□ -0.73
PTPRF-203ENST00000372407 PIGMQ9H3S5 423 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 SLC25A19Q9HC21 320 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 PRAMEF25A6NGN4 478 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 FGF17O60258 216 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 FZD6O60353 706 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 ICMTO60725 284 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 TSPAN12O95859 305 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 HIST1H1CP16403 213 aaKnown RBP10.46□□□□□ -0.73
PTPRF-203ENST00000372407 SPI1P17947 270 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 ANXA7P20073 488 aaKnown RBP10.46□□□□□ -0.73
PTPRF-203ENST00000372407 EPHA2P29317 976 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 ZNF133P52736 654 aaPredicted RBP10.46□□□□□ -0.73
PTPRF-203ENST00000372407 DGCR2P98153 550 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 DCAF12Q5T6F0 453 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 RNLSQ5VYX0 342 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 TMEM179BQ7Z7N9 219 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 EDAQ92838 391 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 NTN4Q9HB63 628 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 PADI1Q9ULC6 663 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 LAMA4Q16363 1823 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 EVPLQ92817 2033 aa10.46□□□□□ -0.73
PTPRF-203ENST00000372407 ZNF814B7Z6K7 855 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 P2RX1P51575 399 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 TPMTP51580 245 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 SPNS2Q8IVW8 549 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 ARIH2OSQ8N7S6 290 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 OR1J2Q8NGS2 313 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 KIRREL1Q96J84 757 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 OPALINQ96PE5 141 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 SLC23A2Q9UGH3 650 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 CHRNA9Q9UGM1 479 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 A0A1B0GTL3 188 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 POM121BA6NF01 834 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 PRRT4C9JH25 899 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 ALOX12BO75342 701 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 CLDN1O95832 211 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 SDHAP31040 664 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 ADPRHP54922 357 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 CDC20Q12834 499 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 HNF4GQ14541 408 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 EMC4Q5J8M3 183 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 NAXDQ8IW45 347 aa10.46□□□□□ -0.74
PTPRF-203ENST00000372407 DMBX1Q8NFW5 382 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms