RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 AKR7LQ8NHP1 331 aa15.78■□□□□ 0.12
CLN3-202ENST00000355477 FNDC8Q8TC99 324 aa15.78■□□□□ 0.12
CLN3-202ENST00000355477 NSMCE2Q96MF7 247 aa15.78■□□□□ 0.12
CLN3-202ENST00000355477 PIMREGQ9BSJ6 248 aa15.78■□□□□ 0.12
CLN3-202ENST00000355477 KCNN2Q9H2S1 579 aa15.78■□□□□ 0.12
CLN3-202ENST00000355477 MYOZ1Q9NP98 299 aaPredicted RBP15.78■□□□□ 0.12
CLN3-202ENST00000355477 IL20RAQ9UHF4 553 aa15.78■□□□□ 0.12
CLN3-202ENST00000355477 DUSP13Q9UII6 198 aa15.78■□□□□ 0.12
CLN3-202ENST00000355477 CUBNO60494 3623 aa15.78■□□□□ 0.12
CLN3-202ENST00000355477 MXRA5Q9NR99 2828 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 LOC100509620A0A075B734 347 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 IGHV4-61A0A0C4DH41 118 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 LYNX1G3V0Z9 82 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 M0R233 179 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 NDUFB2O95178 105 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 STAMBPO95630 424 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 CLPTM1O96005 669 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 LYNX1P0DP58 116 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 ITGA2P17301 1181 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 STOMP27105 288 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 UCP2P55851 309 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 MXRA7P84157 204 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 KRT72Q14CN4 511 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 C16orf89Q6UX73 402 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 OR1J2Q8NGS2 313 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 RASD2Q96D21 266 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 RSRC1Q96IZ7 334 aaKnown RBP15.77■□□□□ 0.12
CLN3-202ENST00000355477 WNT5BQ9H1J7 359 aa15.77■□□□□ 0.12
CLN3-202ENST00000355477 COL6A5A8TX70 2615 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 A0A1W2PPL8 197 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 IMPA2O14732 288 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 LCKP06239 509 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 ERCC1P07992 297 aaPredicted RBP15.76■□□□□ 0.11
CLN3-202ENST00000355477 CST2P09228 141 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 IGHV4-31P0DP07 118 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 CCNOP22674 350 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 APLNRP35414 380 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 ENDOGQ14249 297 aaKnown RBP15.76■□□□□ 0.11
CLN3-202ENST00000355477 ALKBH6Q3KRA9 238 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 C6orf52Q5T4I8 152 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 RGS7BPQ6MZT1 257 aaPredicted RBP15.76■□□□□ 0.11
CLN3-202ENST00000355477 UGT2A3Q6UWM9 527 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 ZNF786Q8N393 782 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 UBASH3BQ8TF42 649 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 POM121L2Q96KW2 1035 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 ZNF570Q96NI8 536 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 ZNF416Q9BWM5 594 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 OR2H1Q9GZK4 316 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 BPESC1Q9GZL8 116 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 LRMDAQ9H2I8 198 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 MS4A5Q9H3V2 200 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 NRIP3Q9NQ35 241 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 NDE1Q9NXR1 346 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 AURKCQ9UQB9 309 aa15.76■□□□□ 0.11
CLN3-202ENST00000355477 TEX13CA0A0J9YWL9 993 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 PRSS37A4D1T9 235 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 UNC119BA6NIH7 251 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 A8MV72 311 aaPredicted RBP15.75■□□□□ 0.11
CLN3-202ENST00000355477 B2RBV5 119 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 DYNC1I1O14576 645 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 GADD45GO95257 159 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 NAT2P11245 290 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 ZNF250P15622 560 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 CTLA4P16410 223 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 MSR1P21757 451 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 GIFP27352 417 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 WNT5AP41221 380 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 RAD52P43351 418 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 SPIBQ01892 262 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 SPATS1Q496A3 300 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 ZER1Q7Z7L7 766 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 ZNF101Q8IZC7 436 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 NSL1Q96IY1 281 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 GPX7Q96SL4 187 aaPredicted RBP15.75■□□□□ 0.11
CLN3-202ENST00000355477 EMC7Q9NPA0 242 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 IL1RAPQ9NPH3 570 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 POLE4Q9NR33 117 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 TIMM10BQ9Y5J6 103 aa15.75■□□□□ 0.11
CLN3-202ENST00000355477 FBN1P35555 2871 aaKnown RBP15.74■□□□□ 0.11
CLN3-202ENST00000355477 IGLV3-9A0A075B6K5 115 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 A0A1W2PPW3 197 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 C5orf49A4QMS7 147 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 KIAA1324LA8MWY0 1029 aaPredicted RBP15.74■□□□□ 0.11
CLN3-202ENST00000355477 SOCS2O14508 198 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 XKRYO14609 159 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 AHCYL1O43865 530 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 FAM107AO95990 144 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 HPXP02790 462 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 FABP3P05413 133 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 SDHAP31040 664 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 GUCA1AP43080 201 aaPredicted RBP15.74■□□□□ 0.11
CLN3-202ENST00000355477 MNAT1P51948 309 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 SMIM11AP58511 58 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 KRR1Q13601 381 aaKnown RBP15.74■□□□□ 0.11
CLN3-202ENST00000355477 RIN1Q13671 783 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 ELFN2Q5R3F8 820 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 OTPQ5XKR4 325 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 CYB5R2Q6BCY4 276 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 ZNF774Q6NX45 483 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 CYP2R1Q6VVX0 501 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms