RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 OOSP2Q86WS3 158 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 C17orf82Q86X59 251 aaPredicted RBP14.36□□□□□ -0.11
HMGA1-202ENST00000347617 OR1S2Q8NGQ3 325 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 OR6K6Q8NGW6 343 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 BAHD1Q8TBE0 780 aaPredicted RBP14.36□□□□□ -0.11
HMGA1-202ENST00000347617 SFT2D1Q8WV19 159 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 TCEAL7Q9BRU2 100 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 ALG12Q9BV10 488 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 DUSP15Q9H1R2 295 aaPredicted RBP14.36□□□□□ -0.11
HMGA1-202ENST00000347617 SYNPO2LQ9H987 977 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 TMEM100Q9NV29 134 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 HRASLS2Q9NWW9 162 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 MKL2Q9ULH7 1088 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 OR2AT4A6NND4 320 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 MCIDASD6RGH6 385 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 K7ESF4 209 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 SLC17A2O00624 439 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 B3GALT2O43825 422 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 LDB3O75112 727 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 S100A9P06702 114 aaKnown RBP14.35□□□□□ -0.11
HMGA1-202ENST00000347617 TMIGD3P0DMS9 266 aaPredicted RBP14.35□□□□□ -0.11
HMGA1-202ENST00000347617 CD79AP11912 226 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 TPT1P13693 172 aaKnown RBP14.35□□□□□ -0.11
HMGA1-202ENST00000347617 MPZP25189 248 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 CASRP41180 1078 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 CAPZA1P52907 286 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 RAB5BP61020 215 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 UBE2MP61081 183 aaKnown RBP14.35□□□□□ -0.11
HMGA1-202ENST00000347617 BLOC1S1P78537 153 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 EGR3Q06889 387 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 ZNF542PQ5EBM4 170 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 LINC01590Q5TEZ4 76 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 STPG1Q5TH74 334 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 LIPNQ5VXI9 398 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 RAB12Q6IQ22 244 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 FAHD2BQ6P2I3 314 aaPredicted RBP14.35□□□□□ -0.11
HMGA1-202ENST00000347617 OGFOD3Q6PK18 319 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 ABHD13Q7L211 337 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 GTPBP8Q8N3Z3 284 aaPredicted RBP14.35□□□□□ -0.11
HMGA1-202ENST00000347617 FAHD2AQ96GK7 314 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 ADAD1Q96M93 576 aaKnown RBP14.35□□□□□ -0.11
HMGA1-202ENST00000347617 ZFYVE21Q9BQ24 234 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 MACROD1Q9BQ69 325 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.35□□□□□ -0.11
HMGA1-202ENST00000347617 TSPAN10Q9H1Z9 355 aaPredicted RBP14.35□□□□□ -0.11
HMGA1-202ENST00000347617 LYRM4Q9HD34 91 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 MMP26Q9NRE1 261 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 ASF1BQ9NVP2 202 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 NOSIPQ9Y314 301 aaKnown RBP14.35□□□□□ -0.11
HMGA1-202ENST00000347617 TMEM14AQ9Y6G1 99 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 SPACA6W5XKT8 324 aa14.35□□□□□ -0.11
HMGA1-202ENST00000347617 OR6C68A6NDL8 312 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 OR4C45A6NMZ5 311 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 F5H0A9 414 aaPredicted RBP14.34□□□□□ -0.11
HMGA1-202ENST00000347617 F8VVB4 439 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 F8VWA3 439 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 SLC25A12O75746 678 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 NKX2-2O95096 273 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 ABHD16AO95870 558 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 STATHP02808 62 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 CD74P04233 296 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 ADH7P40394 386 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 NXPH1P58417 271 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 HNRNPKP61978 463 aaKnown RBP eCLIP14.34□□□□□ -0.116e-30■□□□□ 9.8
HMGA1-202ENST00000347617 INPP5JQ15735 1006 aaPredicted RBP14.34□□□□□ -0.11
HMGA1-202ENST00000347617 FDX2Q6P4F2 183 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 RNF44Q7L0R7 432 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 OR51L1Q8NGJ5 315 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 STK35Q8TDR2 534 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 ELP5Q8TE02 316 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 RNF141Q8WVD5 230 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 HOXB13Q92826 284 aaPredicted RBP14.34□□□□□ -0.11
HMGA1-202ENST00000347617 SEMA6CQ9H3T2 930 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 ADAP2Q9NPF8 381 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 SLC2A8Q9NY64 477 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 ERVK-19Q9WJR5 959 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 SLCO1B1Q9Y6L6 691 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 SULT2B1O00204 365 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 CELA2BP08218 269 aaPredicted RBP14.34□□□□□ -0.11
HMGA1-202ENST00000347617 ZNF888P0CJ79 500 aaPredicted RBP14.34□□□□□ -0.11
HMGA1-202ENST00000347617 ACAA2P42765 397 aaKnown RBP14.34□□□□□ -0.11
HMGA1-202ENST00000347617 POU3F4P49335 361 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 DRAM2Q6UX65 266 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 JAZF1Q86VZ6 243 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 CDC20BQ86Y33 519 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 ZNF676Q8N7Q3 588 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 ZDHHC22Q8N966 263 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 SLC30A7Q8NEW0 376 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 OR6S1Q8NH40 331 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 PATE1Q8WXA2 126 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 MCHR2Q969V1 340 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 ZBTB8AQ96BR9 441 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 NMNAT3Q96T66 252 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 ZNF251Q9BRH9 671 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 CHST6Q9GZX3 395 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 WDR13Q9H1Z4 485 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 RNF122Q9H9V4 155 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 IL21RQ9HBE5 538 aa14.34□□□□□ -0.11
HMGA1-202ENST00000347617 DNAJB12Q9NXW2 375 aaKnown RBP14.34□□□□□ -0.11
HMGA1-202ENST00000347617 FRRS1LQ9P0K9 344 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms