RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 H7C2Y5 167 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 ATG12O94817 140 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 HLA-AP01891 365 aaKnown RBP20.21■□□□□ 0.83
TRIM28-202ENST00000341753 CAPZA1P52907 286 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 KIR2DS3Q14952 304 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 CD163Q86VB7 1156 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 OR5M8Q8NGP6 311 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 PPP1R1CQ8WVI7 109 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 GPN3Q9UHW5 284 aaPredicted RBP20.21■□□□□ 0.83
TRIM28-202ENST00000341753 LOC100289279A0A1B0GTE1 492 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 SERINC4A6NH21 518 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 TMEM212A6NML5 194 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 BCL2L11O43521 198 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 ALOX5APP20292 161 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 AGTR1P30556 359 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 C11orf87Q6NUJ2 197 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 POMZP3Q6PJE2 187 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 CSNK1A1LQ8N752 337 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 PMM1Q92871 262 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 C4orf45Q96LM5 186 aa20.21■□□□□ 0.83
TRIM28-202ENST00000341753 HLA-DQA2P01906 255 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 SDHAP31040 664 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 TNFRSF4P43489 277 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 TAS2R19P59542 299 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 SQSTM1Q13501 440 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 ZNF74Q16587 644 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 LDLRAD3Q86YD5 345 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 VSTM2LQ96N03 204 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 TSPAN32Q96QS1 320 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 LPAR4Q99677 370 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 TCEAL2Q9H3H9 227 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-202ENST00000341753 ELOVL3Q9HB03 270 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 COMMD9Q9P000 198 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 FOXS1O43638 330 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 SLC25A1P53007 311 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 ZNF141Q15928 474 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 MOGAT2Q3SYC2 334 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 PM20D2Q8IYS1 436 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 NKD1Q969G9 470 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 LMF2Q9BU23 707 aaKnown RBP20.2■□□□□ 0.82
TRIM28-202ENST00000341753 POTEKPQ9BYX7 375 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 UPB1Q9UBR1 384 aa20.2■□□□□ 0.82
TRIM28-202ENST00000341753 FITM1A5D6W6 292 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 F5H0A9 414 aaPredicted RBP20.19■□□□□ 0.82
TRIM28-202ENST00000341753 SLC35E2P0CK97 266 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 ADCYAP1P18509 176 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 CTHP32929 405 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 RPL18Q07020 188 aaKnown RBP20.19■□□□□ 0.82
TRIM28-202ENST00000341753 SNTB1Q13884 538 aaKnown RBP20.19■□□□□ 0.82
TRIM28-202ENST00000341753 MANEAQ5SRI9 462 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 HAGHLQ6PII5 290 aaPredicted RBP20.19■□□□□ 0.82
TRIM28-202ENST00000341753 CBLN3Q6UW01 205 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 RHOUQ7L0Q8 258 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 BPIFB2Q8N4F0 458 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 LRRC75AQ8NAA5 344 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 OR1J4Q8NGS1 313 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 MRGPRX1Q96LB2 322 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 SLC6A7Q99884 636 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 GABRG3Q99928 467 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 CLEC1BQ9P126 229 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 MSRAQ9UJ68 235 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 NPIPB9F8W1W9 429 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 TNFSF14O43557 240 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 PNPP00491 289 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 ACTBP60709 375 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 ACTG1P63261 375 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 SRSF3P84103 164 aaKnown RBP20.19■□□□□ 0.82
TRIM28-202ENST00000341753 OR7A5Q15622 319 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 MEP1BQ16820 701 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 C3orf33Q6P1S2 294 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 TMEM92Q6UXU6 159 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 KTI12Q96EK9 354 aaPredicted RBP20.19■□□□□ 0.82
TRIM28-202ENST00000341753 SCARF2Q96GP6 870 aaPredicted RBP20.19■□□□□ 0.82
TRIM28-202ENST00000341753 DCBLD2Q96PD2 775 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 GPX7Q96SL4 187 aaPredicted RBP20.19■□□□□ 0.82
TRIM28-202ENST00000341753 MICU1Q9BPX6 476 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 FAM117AQ9C073 453 aa20.19■□□□□ 0.82
TRIM28-202ENST00000341753 ALX4Q9H161 411 aaPredicted RBP20.19■□□□□ 0.82
TRIM28-202ENST00000341753 DCDC2BA2VCK2 349 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 SLC17A2O00624 439 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 CELA2BP08218 269 aaPredicted RBP20.18■□□□□ 0.82
TRIM28-202ENST00000341753 CD226Q15762 336 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 GLYATL3Q5SZD4 288 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 OR5T2Q8NGG2 359 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 INTS14Q96SY0 518 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 C12orf57Q99622 126 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 HIF3AQ9Y2N7 669 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 EFCAB7A8K855 629 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 CD8AP01732 235 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 AVPR2P30518 371 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 NFATC4Q14934 902 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 ISXQ2M1V0 245 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 PRAMEF17Q5VTA0 474 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 RAB12Q6IQ22 244 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 MDGA2Q7Z553 956 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 BCORP1Q8N888 145 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 OR13C8Q8NGS7 320 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 ASB12Q8WXK4 309 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 ZBTB8AQ96BR9 441 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 RBM18Q96H35 190 aaKnown RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms