RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ITPKCQ96DU7 683 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 C12orf4Q9NQ89 552 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 A0A1W2PNR3 127 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 FAM172BPA6NC97 362 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 M0R135 149 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 XRCC2O43543 280 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 PGAM2P15259 253 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 PRKACAP17612 351 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 MADCAM1Q13477 382 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 RSU1Q15404 277 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 FCRLAQ7L513 359 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 ATG4DQ86TL0 474 aaPredicted RBP6.21□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF799Q96GE5 643 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 OR8B4Q96RC9 309 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 TTTY10Q9BZA0 68 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 ANKRD10Q9NXR5 420 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 ATPIF1Q9UII2 106 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 RBMX2Q9Y388 322 aaKnown RBP6.21□□□□□ -1.42
SF3B1-201ENST00000335508 POLQO75417 2590 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 C2CD3Q4AC94 2353 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 IGKV3D-11A0A0A0MRZ8 115 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 hCG_1807616A0A1W2PRN6 198 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 BDKRB2P30411 391 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 GZMMP51124 257 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 PPIAP62937 165 aaKnown RBP6.21□□□□□ -1.42
SF3B1-201ENST00000335508 MYBPHQ13203 477 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 STK11Q15831 433 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 RIPPLY2Q5TAB7 128 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 SMIM19Q96E16 107 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 SIGLEC11Q96RL6 698 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 IRF2P14316 349 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 PVALBP20472 110 aaPredicted RBP6.21□□□□□ -1.42
SF3B1-201ENST00000335508 FOXC1Q12948 553 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 AQP6Q13520 282 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 CTU2Q2VPK5 515 aaKnown RBP6.21□□□□□ -1.42
SF3B1-201ENST00000335508 ATAD3CQ5T2N8 411 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 OR6Q1Q8NGQ2 317 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 CT55Q8WUE5 264 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 GINS4Q9BRT9 223 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 ETV7Q9Y603 341 aa6.21□□□□□ -1.42
SF3B1-201ENST00000335508 TDRD6O60522 2096 aaKnown RBP6.21□□□□□ -1.42
SF3B1-201ENST00000335508 SLC22A23A1A5C7 686 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ANKRD33BA6NCL7 494 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 M0R129 80 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 SOCS6O14544 535 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ARR3P36575 388 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 EIF2B2P49770 351 aaKnown RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ARHGDIBP52566 201 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 PSMA6P60900 246 aaKnown RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 MEF2DQ14814 521 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 DEFB109BQ30KR1 87 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 KDM8Q8N371 416 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF615Q8N8J6 731 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ABHD4Q8TB40 342 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 TMIGD2Q96BF3 282 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 SPIN2AQ99865 258 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 SPIN2BQ9BPZ2 258 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 TMEM59Q9BXS4 323 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 MARCH7Q9H992 704 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 MED29Q9NX70 200 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF221Q9UK13 617 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 SLC22A20A6NK97 555 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 OPN1LWP04000 364 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 CSF1P09603 554 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 EPHA2P29317 976 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 CYCSP99999 105 aaKnown RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 MTFR2Q6P444 385 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 CCBE1Q6UXH8 406 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF517Q6ZMY9 492 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 PSD2Q9BQI7 771 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 PTTG3PQ9NZH4 202 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 B3GAT1Q9P2W7 334 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 OR52A1Q9UKL2 312 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 COA3Q9Y2R0 106 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 POLDIP2Q9Y2S7 368 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 RAB19A4D1S5 217 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 PRR19A6NJB7 356 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 QDPRP09417 244 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 LIMS3P0CW19 117 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 LIMS4P0CW20 117 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 NTRK2Q16620 822 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 PRICKLE2Q7Z3G6 844 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 SIMC1Q8NDZ2 872 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 OR6X1Q8NH79 312 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 RPL3LQ92901 407 aaKnown RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 OR5M11Q96RB7 305 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ABHD6Q9BV23 337 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 SCPEP1Q9HB40 452 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 SH3BGRL2Q9UJC5 107 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF346Q9UL40 294 aaKnown RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 NUDT19A8MXV4 375 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 H7C1Q1 480 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 TGM4P49221 684 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 MMP16P51512 607 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 LSM6P62312 80 aaKnown RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 CDK5Q00535 292 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 MAB21L1Q13394 359 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 C4orf46Q504U0 113 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 OR9K2Q8NGE7 335 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 PAQR8Q8TEZ7 354 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms