RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 MAGEB1P43366 347 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 RGS19P49795 217 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 KRBOX4Q5JUW0 171 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 MISPQ8IVT2 679 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 MAFIPQ8WZ33 124 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 ZNF707Q96C28 371 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-201ENST00000323668 KCNJ15Q99712 375 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 CRB3Q9BUF7 120 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 PIGMQ9H3S5 423 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 MCCC2Q9HCC0 563 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 OR5V1Q9UGF6 321 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 MRPS28Q9Y2Q9 187 aaKnown RBP13.41□□□□□ -0.26
TCOF1-201ENST00000323668 A0A0A6YYH2 397 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 LOC107986453A0A1B0GWG9 222 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 OR2W5A6NFC9 320 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 A6NJ64 397 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 IDSB3KWA1 339 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 GLSO94925 669 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-201ENST00000323668 CFIP05156 583 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 HOXD11P31277 338 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-201ENST00000323668 ACY1Q03154 408 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 C17orf67Q0P5P2 114 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 ELAVL1Q15717 326 aaKnown RBP13.41□□□□□ -0.26
TCOF1-201ENST00000323668 RELL2Q8NC24 303 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-201ENST00000323668 OR11H7Q8NGC8 314 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 MRGPRX1Q96LB2 322 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 UBL7Q96S82 380 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-201ENST00000323668 JAM3Q9BX67 310 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 NARFLQ9H6Q4 476 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 SLCO1C1Q9NYB5 712 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 FOXJ3Q9UPW0 622 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 SF3B6Q9Y3B4 125 aaKnown RBP13.41□□□□□ -0.26
TCOF1-201ENST00000323668 TOR1AO14656 332 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 ACSM4P0C7M7 580 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 CAMK2DQ13557 499 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 ZBTB44Q8NCP5 570 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 WDR89Q96FK6 387 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-201ENST00000323668 LRRC46Q96FV0 321 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 SHDQ96IW2 340 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 NXF5Q9H1B4 397 aaKnown RBP13.41□□□□□ -0.26
TCOF1-201ENST00000323668 CES1P1Q9UKY3 287 aa13.41□□□□□ -0.26
TCOF1-201ENST00000323668 SIRT4Q9Y6E7 314 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-201ENST00000323668 NYNRINQ9P2P1 1898 aaKnown RBP13.4□□□□□ -0.26
TCOF1-201ENST00000323668 LEUTXA8MZ59 168 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 GMDSO60547 372 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 S100A2P29034 98 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 FXYD4P59646 89 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 KIAA0907Q7Z7F0 614 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-201ENST00000323668 ANGPTL5Q86XS5 388 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 SPTSSAQ969W0 71 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 C3orf49Q96BT1 292 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 LAT2Q9GZY6 243 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 LHX9Q9NQ69 397 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 PLEK2Q9NYT0 353 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 UBE2J1Q9Y385 318 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-201ENST00000323668 MAP1BP46821 2468 aaKnown RBP13.4□□□□□ -0.26
TCOF1-201ENST00000323668 FBXO24O75426 580 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 DIRAS3O95661 229 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 CHRM2P08172 466 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 BIDP55957 195 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 C19orf57Q0VDD7 668 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 ZNF74Q16587 644 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 OTPQ5XKR4 325 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 LYPD8Q6UX82 237 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 MR1Q95460 341 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 SLC25A32Q9H2D1 315 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 MRPS2Q9Y399 296 aaKnown RBP13.4□□□□□ -0.26
TCOF1-201ENST00000323668 ATG2BQ96BY7 2078 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 C7orf66A4D0T2 115 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 SULT1C2O00338 296 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 SLC17A2O00624 439 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 SLC25A1P53007 311 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 TAS2R46P59540 309 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 PTDSS2Q9BVG9 487 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 MCOLN1Q9GZU1 580 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 MTFP1Q9UDX5 166 aa13.4□□□□□ -0.26
TCOF1-201ENST00000323668 A0A1B0GV50 99 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 PRSS37A4D1T9 235 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 HTRA4P83105 476 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-201ENST00000323668 SNTB1Q13884 538 aaKnown RBP13.39□□□□□ -0.27
TCOF1-201ENST00000323668 FAM53BQ14153 422 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 SLC36A2Q495M3 483 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 ACOT7LQ6ZUV0 252 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 FAM57BQ71RH2 274 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 BIN3Q9NQY0 253 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 RPH3AQ9Y2J0 694 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-201ENST00000323668 ALPK2Q86TB3 2170 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 SULT1A3P0DMM9 295 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 SULT1A4P0DMN0 295 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 GUCA2AQ02747 115 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 OR10K2Q6IF99 312 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 SSX6Q7RTT6 188 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 ZNF687Q8N1G0 1237 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 SPICQ8N5J4 248 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 CCDC74AQ96AQ1 378 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 SCN3AQ9NY46 2000 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 LGALS8O00214 317 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 CTDSPLO15194 276 aa13.39□□□□□ -0.27
TCOF1-201ENST00000323668 GSTZ1O43708 216 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-201ENST00000323668 ZNF254O75437 659 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms