RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 OR52E2Q8NGJ4 325 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 OR13C8Q8NGS7 320 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 CANT1Q8WVQ1 401 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 PYCR2Q96C36 320 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM43Q9BTV4 400 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 DUSP21Q9H596 190 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 FTSJ1Q9UET6 329 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 ZFP30Q9Y2G7 519 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 CHD2O14647 1828 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 LOC100289279A0A1B0GTE1 492 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 SERINC4A6NH21 518 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 EFSO43281 561 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 NCR1O76036 304 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 APBA3O96018 575 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 TYRP14679 529 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 ATF1P18846 271 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 SFTPDP35247 375 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 SEC13P55735 322 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 PMCHL1Q16048 86 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 PRR4Q16378 134 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 TBC1D28Q2M2D7 210 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 SPATA45Q537H7 98 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 WDR89Q96FK6 387 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 HMCESQ96FZ2 354 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 ACY3Q96HD9 319 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 PRMT6Q96LA8 375 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 TEX101Q9BY14 249 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 ACTR3CQ9C0K3 210 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 OPN3Q9H1Y3 402 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 IL37Q9NZH6 218 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 GIMAP2Q9UG22 337 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 MIOXQ9UGB7 285 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 ADAMTS5Q9UNA0 930 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 SERTM1A2A2V5 107 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM88BA6NKF7 163 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 SETD1AO15047 1707 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 MPDU1O75352 247 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 CD14P08571 375 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 LGALS3P17931 250 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 RBMS1P29558 406 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 CSF2RBP32927 897 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 NDUFV1P49821 464 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 OR4D2P58180 307 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 GNB2P62879 340 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 HERPUD1Q15011 391 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 OR51E1Q8TCB6 317 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 DDIT4LQ96D03 193 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 SEMA3CQ99985 751 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 FAM117AQ9C073 453 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 NMUR1Q9HB89 426 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 UTS2RQ9UKP6 389 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 RAXQ9Y2V3 346 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 PLSCR5A0PG75 271 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 PRR32B1ATL7 298 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 FZD7O75084 574 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 GPX5O75715 221 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 OR1D2P34982 312 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 PTGFRP43088 359 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 ROM1Q03395 351 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 OR8B8Q15620 311 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 SYPL1Q16563 259 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 OR1L8Q8NGR8 309 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 PURBQ96QR8 312 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 RARRES2Q99969 163 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 RDH14Q9HBH5 336 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 TCFL5Q9UL49 500 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 ABCC1P33527 1531 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 IGKV3D-11A0A0A0MRZ8 115 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 C1QTNF9BB2RNN3 333 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 NDUFS4O43181 175 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 IGKV3-11P04433 115 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 PAEPP09466 180 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 GMPRP36959 345 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 CCL23P55773 120 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 RACK1P63244 317 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 CNTN2Q02246 1040 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 C1orf53Q5VUE5 145 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 CYHR1Q6ZMK1 362 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 RBPMS2Q6ZRY4 209 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 PLEKHH3Q7Z736 793 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 BCORP1Q8N888 145 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 NAT8LQ8N9F0 302 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 PIGCQ92535 297 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 GPR82Q96P67 336 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 WIPI2Q9Y4P8 454 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 GRM6O15303 877 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 P2RX6O15547 441 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 TBX10O75333 385 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC35E2P0CK97 266 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 CASP7P55210 303 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 RPS14P62263 151 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 GAGE2EQ4V326 116 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 CNTN4Q8IWV2 1026 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 PNPLA1Q8N8W4 532 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 FADS6Q8N9I5 356 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 OR4X2Q8NGF9 303 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC7A13Q8TCU3 470 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 NUDCD2Q8WVJ2 157 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 PYURFQ96I23 114 aa7.05□□□□□ -1.28
LIMCH1-201ENST00000313860 CGREF1Q99674 301 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms