RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GPR62Q9BZJ7 368 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 ACTL7AQ9Y615 435 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 LRRC30A6NM36 301 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 CCL5P13501 91 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 SNRPGP15A8MWD9 76 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 GPR171O14626 319 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 HNF1AP20823 631 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 PTGER1P34995 402 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 FXNQ16595 210 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 PGBD5Q8N414 524 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 SLC35A4Q96G79 324 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 SLC22A12Q96S37 553 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 ATP13A2Q9NQ11 1180 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 DECR2Q9NUI1 292 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF354AO60765 605 aaPredicted RBP12.77□□□□□ -0.36
CSPG4-201ENST00000308508 ABHD16AO95870 558 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 SOX4Q06945 474 aaPredicted RBP12.77□□□□□ -0.36
CSPG4-201ENST00000308508 EMG1Q92979 244 aaKnown RBP12.77□□□□□ -0.36
CSPG4-201ENST00000308508 CREBZFQ9NS37 354 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 PHOX2AO14813 284 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 GLAP06280 429 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 EXOSC2Q13868 293 aaKnown RBP12.77□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF787Q6DD87 383 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF583Q96ND8 569 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 TECTBQ96PL2 329 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 CLEC2DQ9UHP7 191 aa12.77□□□□□ -0.36
CSPG4-201ENST00000308508 NSG1A0A0A6YYJ2 146 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 YKT6O15498 198 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 EIF1BO60739 113 aaKnown RBP12.77□□□□□ -0.37
CSPG4-201ENST00000308508 OPN1LWP04000 364 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 FURINP09958 794 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 AMTP48728 403 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 C17orf67Q0P5P2 114 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 TBPL2Q6SJ96 375 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 GJC3Q8NFK1 279 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 OR5AP2Q8NGF4 316 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 TIMM29Q9BSF4 260 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 NOSIPQ9Y314 301 aaKnown RBP12.77□□□□□ -0.37
CSPG4-201ENST00000308508 NUP188Q5SRE5 1749 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 ZP3P21754 424 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 FGF7P21781 194 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 MPGP29372 298 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 AANATQ16613 207 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 TMEM183BQ1AE95 376 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 GRAMD2AQ8IUY3 354 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 SPNS1Q9H2V7 528 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 CACFD1Q9UGQ2 172 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 CD14P08571 375 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 RPL12P30050 165 aaKnown RBP12.77□□□□□ -0.37
CSPG4-201ENST00000308508 HLA-FP30511 346 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 PIGAP37287 484 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 SLC6A11P48066 632 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 DOC2BQ14184 412 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 LYRM7Q5U5X0 104 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 CDC20BQ86Y33 519 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 COMMD1Q8N668 190 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 RPUSD4Q96CM3 377 aaKnown RBP12.77□□□□□ -0.37
CSPG4-201ENST00000308508 DCAF16Q9NXF7 216 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 CDC14CA4D256 554 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 GABRB1P18505 474 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 EPHA5P54756 1037 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 RAB38P57729 211 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 CARD18P57730 90 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 BPIFB3P59826 476 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 IHHQ14623 411 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 NR0B2Q15466 257 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 SMAD2Q15796 467 aaKnown RBP12.77□□□□□ -0.37
CSPG4-201ENST00000308508 TRIM61Q5EBN2 209 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 SHISA6Q6ZSJ9 500 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 AAED1Q7RTV5 226 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 CHST8Q9H2A9 424 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 TMEM231Q9H6L2 316 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 UCK1Q9HA47 277 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 ARNT2Q9HBZ2 717 aa12.77□□□□□ -0.37
CSPG4-201ENST00000308508 EVPLQ92817 2033 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 DBX1A6NMT0 343 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 LAMTOR5O43504 91 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 CSF2RAP15509 400 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 CLDN20P56880 219 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 ZNF852Q6ZMS4 543 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 ZIC5Q96T25 663 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 POLR2IP36954 125 aaKnown RBP12.76□□□□□ -0.37
CSPG4-201ENST00000308508 ZP2Q05996 745 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 GDF7Q7Z4P5 450 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 HSD11B1LQ7Z5J1 315 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 EGLN2Q96KS0 407 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 FLVCR1Q9Y5Y0 555 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 A0A1B0GUH1 482 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 SOD1P00441 154 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 CD46P15529 392 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 NIPSNAP1Q9BPW8 284 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 MACROD1Q9BQ69 325 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 C16orf70Q9BSU1 422 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 DUSP23Q9BVJ7 150 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 PPP6CO00743 305 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 APEHP13798 732 aaKnown RBP12.76□□□□□ -0.37
CSPG4-201ENST00000308508 RPL7P18124 248 aaKnown RBP12.76□□□□□ -0.37
CSPG4-201ENST00000308508 OR52I2Q8NH67 350 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 TMEM255BQ8WV15 326 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 BARX1Q9HBU1 254 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms