RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 OR9K2Q8NGE7 335 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 PSMF1Q92530 271 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 RASD2Q96D21 266 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 SLC17A5Q9NRA2 495 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 CYSLTR2Q9NS75 346 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 GLTPQ9NZD2 209 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 A0A1W2PQL4 384 aaPredicted RBP12.35□□□□□ -0.43
LDLR-201ENST00000252444 MPIG6BO95866 241 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 PLA1AQ53H76 456 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 ATF6BQ99941 703 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 EXOGQ9Y2C4 368 aaKnown RBP12.35□□□□□ -0.43
LDLR-201ENST00000252444 IGHV1-45A0A0A0MS14 117 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 ANKRD33BA6NCL7 494 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 SULT1C2O00338 296 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 DCAF10Q5QP82 559 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 DPY19L4Q7Z388 723 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 OR51L1Q8NGJ5 315 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 KISS1RQ969F8 398 aaPredicted RBP12.35□□□□□ -0.43
LDLR-201ENST00000252444 TTTY10Q9BZA0 68 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 PCDHB10Q9UN67 800 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 B9D1Q9UPM9 204 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.35□□□□□ -0.43
LDLR-201ENST00000252444 M0R129 80 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 SRP9P49458 86 aaKnown RBP12.35□□□□□ -0.43
LDLR-201ENST00000252444 CCR9P51686 369 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 PSMA6P60900 246 aaKnown RBP12.35□□□□□ -0.43
LDLR-201ENST00000252444 ZNF718Q3SXZ3 478 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 DNAAF1Q8NEP3 725 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 TMEM59Q9BXS4 323 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 DECR2Q9NUI1 292 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 SIGLEC7Q9Y286 467 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 MRPS28Q9Y2Q9 187 aaKnown RBP12.35□□□□□ -0.43
LDLR-201ENST00000252444 ZNF736B4DX44 427 aaPredicted RBP12.34□□□□□ -0.43
LDLR-201ENST00000252444 HIST1H1CP16403 213 aaKnown RBP12.34□□□□□ -0.43
LDLR-201ENST00000252444 LSM6P62312 80 aaKnown RBP12.34□□□□□ -0.43
LDLR-201ENST00000252444 CATR1Q13166 79 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 FAM209AQ5JX71 171 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 OR6Q1Q8NGQ2 317 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 DEFB127Q9H1M4 99 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 TRAV1-2A0A0B4J238 106 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 SLC17A1Q14916 467 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 CTU2Q2VPK5 515 aaKnown RBP12.34□□□□□ -0.43
LDLR-201ENST00000252444 BEST3Q8N1M1 668 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.34□□□□□ -0.43
LDLR-201ENST00000252444 BCO1Q9HAY6 547 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 TRAV18A0A075B6X5 111 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 PRAMEF4O60810 478 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 UPK1BO75841 260 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 EML2O95834 649 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 RECKO95980 971 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 OPRM1P35372 400 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 DBPQ10586 325 aaPredicted RBP12.34□□□□□ -0.43
LDLR-201ENST00000252444 PRAMEF9Q5VWM5 478 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 ATG4DQ86TL0 474 aaPredicted RBP12.34□□□□□ -0.43
LDLR-201ENST00000252444 GHSRQ92847 366 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 GUCD1Q96NT3 240 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 GP6Q9HCN6 339 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 SOCS6O14544 535 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 SLC34A2O95436 690 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 PIGFQ07326 219 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 SGPP2Q8IWX5 399 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 PIGCQ92535 297 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 PHB2Q99623 299 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 ANGPTL4Q9BY76 406 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 ZCCHC4Q9H5U6 513 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 NUDT15Q9NV35 164 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 CACNG2Q9Y698 323 aa12.34□□□□□ -0.43
LDLR-201ENST00000252444 KIR2DS1A0A191URI9 304 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 FAM183AA6NL82 134 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 FAM171A2A8MVW0 826 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 EEF1E1-BLOC1S5C9J1V9 151 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 TNFSF11O14788 317 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 KIR2DS4P43632 304 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 MTCP1P56278 107 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 TPBGQ13641 420 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 KIR2DS1Q14954 304 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 LINC00346Q8IVM7 164 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 SMIM19Q96E16 107 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 NOX4Q9NPH5 578 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 CDK10Q15131 360 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 HES5Q5TA89 166 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 GSG1LQ6UXU4 331 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 OR10G3Q8NGC4 313 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 ITPKCQ96DU7 683 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 ABCG5Q9H222 651 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 PIGMQ9H3S5 423 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 HINT3Q9NQE9 182 aaKnown RBP12.33□□□□□ -0.44
LDLR-201ENST00000252444 KCNS2Q9ULS6 477 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 MYBPHQ13203 477 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 RBM45Q8IUH3 476 aaKnown RBP12.33□□□□□ -0.44
LDLR-201ENST00000252444 SPSB1Q96BD6 273 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 TXNL4BQ9NX01 149 aaKnown RBP12.33□□□□□ -0.44
LDLR-201ENST00000252444 FAM230AA0A1W2PPH8 454 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 M0R135 149 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 CAPNS1P04632 268 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 PTGS2P35354 604 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 CNIH2Q6PI25 160 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 USP51Q70EK9 711 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 ZNF799Q96GE5 643 aa12.33□□□□□ -0.44
LDLR-201ENST00000252444 ZNF226Q9NYT6 803 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms