RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 PPEF1O14829 653 aaPredicted RBP15.24■□□□□ 0.03
LINC00339-213ENST00000642137 MINPP1Q9UNW1 487 aa15.24■□□□□ 0.03
LINC00339-213ENST00000642137 ATP6V0A2Q9Y487 856 aa15.24■□□□□ 0.03
LINC00339-213ENST00000642137 LRP5O75197 1615 aa15.24■□□□□ 0.03
LINC00339-213ENST00000642137 SLX4Q8IY92 1834 aa15.23■□□□□ 0.03
LINC00339-213ENST00000642137 SASH1O94885 1247 aa15.23■□□□□ 0.03
LINC00339-213ENST00000642137 OS9Q13438 667 aaPredicted RBP15.23■□□□□ 0.03
LINC00339-213ENST00000642137 CC2D2BQ6DHV5 1058 aa15.23■□□□□ 0.03
LINC00339-213ENST00000642137 B4GALNT3Q6L9W6 998 aa15.23■□□□□ 0.03
LINC00339-213ENST00000642137 PRPF40BQ6NWY9 871 aaKnown RBP15.23■□□□□ 0.03
LINC00339-213ENST00000642137 CENPQQ7L2Z9 268 aaPredicted RBP15.23■□□□□ 0.03
LINC00339-213ENST00000642137 NLGN2Q8NFZ4 835 aa15.23■□□□□ 0.03
LINC00339-213ENST00000642137 RHPN1Q8TCX5 695 aa15.23■□□□□ 0.03
LINC00339-213ENST00000642137 C7orf43Q8WVR3 580 aa15.23■□□□□ 0.03
LINC00339-213ENST00000642137 KIF1BPQ96EK5 621 aa15.23■□□□□ 0.03
LINC00339-213ENST00000642137 ANKRD2Q9GZV1 360 aa15.23■□□□□ 0.03
LINC00339-213ENST00000642137 TMX4Q9H1E5 349 aaPredicted RBP15.23■□□□□ 0.03
LINC00339-213ENST00000642137 CEP126Q9P2H0 1117 aa15.23■□□□□ 0.03
LINC00339-213ENST00000642137 COL4A1P02462 1669 aa15.22■□□□□ 0.03
LINC00339-213ENST00000642137 CHRNDQ07001 517 aa15.22■□□□□ 0.03
LINC00339-213ENST00000642137 GRIPAP1Q4V328 841 aa15.22■□□□□ 0.03
LINC00339-213ENST00000642137 DALRD3Q5D0E6 543 aaKnown RBP15.22■□□□□ 0.03
LINC00339-213ENST00000642137 METTL24Q5JXM2 366 aa15.22■□□□□ 0.03
LINC00339-213ENST00000642137 SPEF2Q9C093 1822 aa15.22■□□□□ 0.03
LINC00339-213ENST00000642137 KDM2BQ8NHM5 1336 aa15.21■□□□□ 0.03
LINC00339-213ENST00000642137 BRCA1P38398 1863 aaKnown RBP15.21■□□□□ 0.03
LINC00339-213ENST00000642137 PDE8BO95263 885 aa15.21■□□□□ 0.03
LINC00339-213ENST00000642137 LRRCC1Q9C099 1032 aa15.21■□□□□ 0.03
LINC00339-213ENST00000642137 GPR108Q9NPR9 543 aa15.21■□□□□ 0.03
LINC00339-213ENST00000642137 CACNA1SQ13698 1873 aa15.2■□□□□ 0.02
LINC00339-213ENST00000642137 TFCP2Q12800 502 aa15.2■□□□□ 0.02
LINC00339-213ENST00000642137 SOGA3Q5TF21 947 aa15.2■□□□□ 0.02
LINC00339-213ENST00000642137 ANKRD45Q5TZF3 282 aa15.2■□□□□ 0.02
LINC00339-213ENST00000642137 VGLL2Q8N8G2 317 aa15.2■□□□□ 0.02
LINC00339-213ENST00000642137 PODXL2Q9NZ53 605 aa15.2■□□□□ 0.02
LINC00339-213ENST00000642137 AKAP2Q9Y2D5 859 aa15.2■□□□□ 0.02
LINC00339-213ENST00000642137 LEMD3Q9Y2U8 911 aa15.2■□□□□ 0.02
LINC00339-213ENST00000642137 C21orf2O43822 256 aa15.19■□□□□ 0.02
LINC00339-213ENST00000642137 TAF5LO75529 589 aa15.19■□□□□ 0.02
LINC00339-213ENST00000642137 ATP2B4P23634 1241 aa15.19■□□□□ 0.02
LINC00339-213ENST00000642137 NUCB1Q02818 461 aa15.19■□□□□ 0.02
LINC00339-213ENST00000642137 UBE4AQ14139 1066 aa15.19■□□□□ 0.02
LINC00339-213ENST00000642137 MPNDQ8N594 471 aa15.19■□□□□ 0.02
LINC00339-213ENST00000642137 HELBQ8NG08 1087 aaPredicted RBP15.19■□□□□ 0.02
LINC00339-213ENST00000642137 ANKIB1Q9P2G1 1089 aa15.19■□□□□ 0.02
LINC00339-213ENST00000642137 ZBTB47Q9UFB7 747 aaPredicted RBP15.19■□□□□ 0.02
LINC00339-213ENST00000642137 NSFL1CQ9UNZ2 370 aaKnown RBP15.19■□□□□ 0.02
LINC00339-213ENST00000642137 XDHP47989 1333 aa15.18■□□□□ 0.02
LINC00339-213ENST00000642137 APBB1O00213 710 aa15.18■□□□□ 0.02
LINC00339-213ENST00000642137 GPSM2P81274 684 aa15.18■□□□□ 0.02
LINC00339-213ENST00000642137 RTKN2Q8IZC4 609 aa15.18■□□□□ 0.02
LINC00339-213ENST00000642137 CLASRPQ8N2M8 674 aaKnown RBP15.18■□□□□ 0.02
LINC00339-213ENST00000642137 BCS1LQ9Y276 419 aa15.18■□□□□ 0.02
LINC00339-213ENST00000642137 FGFR2P21802 821 aa15.17■□□□□ 0.02
LINC00339-213ENST00000642137 CCDC93Q567U6 631 aa15.17■□□□□ 0.02
LINC00339-213ENST00000642137 CHD1LQ86WJ1 897 aa15.17■□□□□ 0.02
LINC00339-213ENST00000642137 LPIN2Q92539 896 aa15.17■□□□□ 0.02
LINC00339-213ENST00000642137 ZNF219Q9P2Y4 722 aaPredicted RBP15.17■□□□□ 0.02
LINC00339-213ENST00000642137 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.17■□□□□ 0.02
LINC00339-213ENST00000642137 LRRC37AA6NMS7 1700 aa15.17■□□□□ 0.02
LINC00339-213ENST00000642137 SMARCA5O60264 1052 aaPredicted RBP15.16■□□□□ 0.02
LINC00339-213ENST00000642137 TIMM10P62072 90 aa15.16■□□□□ 0.02
LINC00339-213ENST00000642137 PUM3Q15397 648 aaKnown RBP15.16■□□□□ 0.02
LINC00339-213ENST00000642137 TNNI3KQ59H18 835 aa15.16■□□□□ 0.02
LINC00339-213ENST00000642137 OLFM4Q6UX06 510 aa15.16■□□□□ 0.02
LINC00339-213ENST00000642137 DPP8Q6V1X1 898 aaPredicted RBP15.16■□□□□ 0.02
LINC00339-213ENST00000642137 EAF2Q96CJ1 260 aaPredicted RBP15.16■□□□□ 0.02
LINC00339-213ENST00000642137 RTFDC1Q9BY42 306 aaPredicted RBP15.16■□□□□ 0.02
LINC00339-213ENST00000642137 IL1RAPL2Q9NP60 686 aa15.16■□□□□ 0.02
LINC00339-213ENST00000642137 GGA1Q9UJY5 639 aa15.16■□□□□ 0.02
LINC00339-213ENST00000642137 FPGT-TNNI3KV9GXZ4 949 aa15.16■□□□□ 0.02
LINC00339-213ENST00000642137 ZNF804BA4D1E1 1349 aa15.16■□□□□ 0.02
LINC00339-213ENST00000642137 ARFGEF1Q9Y6D6 1849 aa15.15■□□□□ 0.02
LINC00339-213ENST00000642137 A0A1B0GUL7 405 aa15.15■□□□□ 0.02
LINC00339-213ENST00000642137 IFIT1P09914 478 aaKnown RBP15.15■□□□□ 0.02
LINC00339-213ENST00000642137 SLC5A1P13866 664 aa15.15■□□□□ 0.02
LINC00339-213ENST00000642137 KCNJ4P48050 445 aa15.15■□□□□ 0.02
LINC00339-213ENST00000642137 ATP2B3Q16720 1220 aa15.15■□□□□ 0.02
LINC00339-213ENST00000642137 C15orf52Q6ZUT6 534 aaKnown RBP15.15■□□□□ 0.02
LINC00339-213ENST00000642137 SUPT20HQ8NEM7 779 aa15.15■□□□□ 0.02
LINC00339-213ENST00000642137 TBC1D16Q8TBP0 767 aa15.15■□□□□ 0.02
LINC00339-213ENST00000642137 POLLQ9UGP5 575 aa15.15■□□□□ 0.02
LINC00339-213ENST00000642137 A0A1B0GUL6 1792 aa15.15■□□□□ 0.02
LINC00339-213ENST00000642137 SLC51AQ86UW1 340 aa15.14■□□□□ 0.01
LINC00339-213ENST00000642137 NEUROD6Q96NK8 337 aa15.14■□□□□ 0.01
LINC00339-213ENST00000642137 PSMD1Q99460 953 aa15.14■□□□□ 0.01
LINC00339-213ENST00000642137 EYA3Q99504 573 aa15.14■□□□□ 0.01
LINC00339-213ENST00000642137 VPS33BQ9H267 617 aa15.14■□□□□ 0.01
LINC00339-213ENST00000642137 WWC3Q9ULE0 1092 aa15.14■□□□□ 0.01
LINC00339-213ENST00000642137 WTIPA6NIX2 430 aaPredicted RBP15.13■□□□□ 0.01
LINC00339-213ENST00000642137 C6orf229H3BNL8 230 aa15.13■□□□□ 0.01
LINC00339-213ENST00000642137 SNAP23O00161 211 aa15.13■□□□□ 0.01
LINC00339-213ENST00000642137 UFL1O94874 794 aa15.13■□□□□ 0.01
LINC00339-213ENST00000642137 IFIT2P09913 472 aaKnown RBP15.13■□□□□ 0.01
LINC00339-213ENST00000642137 AACSQ86V21 672 aa15.13■□□□□ 0.01
LINC00339-213ENST00000642137 SNED1Q8TER0 1413 aa15.13■□□□□ 0.01
LINC00339-213ENST00000642137 LNPKQ9C0E8 428 aa15.13■□□□□ 0.01
LINC00339-213ENST00000642137 CCDC8Q9H0W5 538 aaPredicted RBP15.13■□□□□ 0.01
LINC00339-213ENST00000642137 LTBP1Q14766 1721 aa15.12■□□□□ 0.01
LINC00339-213ENST00000642137 FKBP4Q02790 459 aaKnown RBP eCLIP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms